Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Modiolus_20philippinarum_20[genbank_20GCA_5F002080025.1_202017-04- 05] 74,573 sequences; 2,629,556,424 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq9175 145 7e-30 seq35982 138 1e-27 >seq9175 Length=65522 Score = 145 bits (160), Expect = 7e-30 Identities = 175/236 (74%), Gaps = 8/236 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || |||||||| ||||| ||||||| | ||||| || | || Sbjct 22880 ATGCAAATCTTTGTCAAAACTTTGACTGGTAAGACCATCACTCTAGAAGTTGAACCATCA 22821 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || || || || |||| |||| |||| || |||||||| || |||||||| || Sbjct 22820 GATACAATTGAAAATGTCA---AAGCTAAAATCCAG-GACAAAGAGGGAATTCCACCAGA 22765 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||||| | | || ||||| || |||||| | ||||||| | | || || ||| || Sbjct 22764 CCAACAGAGATTGATCTTTGCTGGAAAACAACTTGAAGATGGTAGAACACTGTCCGACTA 22705 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATT 25230 ||| ||||| ||||||||||| || |||||||| | | ||| | || ||||||| Sbjct 22704 CAACATTCAGAAAGAATCCACACTCCATTTAGTATTGCGTCTACGTGGTGGAAATT 22649 Score = 118 bits (130), Expect = 9e-22 Identities = 166/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || || ||||| || || ||||||| | ||||| || | || Sbjct 23108 ATGCAAATCTTCGTCAAAACATTGACTGGCAAGACCATCACGCTAGAAGTTGAACCATCA 23049 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || || ||| | || |||| |||| || |||||||| || |||||||| ||| Sbjct 23048 GATACAATTGAG--AATGTCAAAGCTAAAATCCAG-GACAAAGAGGGAATTCCACCAGAC 22992 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 |||||| | | || |||||||| |||||| | ||||||| | | || | || ||| Sbjct 22991 CAACAGAGATTGATCTTTGCCGGAAAACAACTTGAAGATGGTAGAACACTATCTGACTAC 22932 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||||| |||||||| || || ||| | || || | || ||||||| Sbjct 22931 AATATTCAGAAAGAATCAACACTCCATCTTGTACTCCGTCTCCGAGGAGG 22882 >seq35982 Length=112201 Score = 138 bits (152), Expect = 1e-27 Identities = 171/232 (74%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| || |||||||| || ||| | || || | |||||||| | || Sbjct 104419 AATGCAAATTTTTGTCAAAACTTTGACAGGAAAAACAATTACTCTGGAAGTGGAACCATC 104478 Query 25058 TGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 |||||||||||| || | |||| || | || || |||||||| ||||| || | Sbjct 104479 TGACACTATCGAAAACGTAA---AAGCTAAGATCCAA-GATAAAGAAGGTATTCCTCCAG 104534 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 | || || || |||| ||||| || |||||||||||||||| ||| || || || | Sbjct 104535 ATCAGCAACGTCTTATCTTTGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCAGACT 104594 Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||| ||||| ||||| || || || ||||| || | || | |||||||| Sbjct 104595 ACAACATTCAGAAAGAGTCAACACTTCATTTGGTCTTGAGATTGAGAGGAGG 104646 Score = 136 bits (150), Expect = 3e-27 Identities = 170/231 (74%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || || | || || ||| | || ||| | |||||||| | ||| Sbjct 104876 ATGCAAATTTTCGTCAAAACACTTACTGGAAAAACAATAACACTTGAAGTGGAACCATCT 104935 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||||||||| || | |||| |||| ||| || |||||||| ||||| || || Sbjct 104936 GACACTATCGAAAACGTAA---AAGCTAAAATTCAA-GATAAAGAAGGTATTCCTCCAGA 104991 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || || || |||| ||||| || |||||||||||||||| ||| || || ||||| Sbjct 104992 TCAGCAACGTCTTATCTTTGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCGGATTA 105051 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || ||||| |||||||| ||||| || | || | |||||||| Sbjct 105052 TAACATCCAGAAAGAGTCCACGCTTCATTTGGTCTTGAGATTGAGAGGAGG 105102 Score = 134 bits (148), Expect = 1e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| |||||||| || || |||| || ||| | ||||| | ||||| || | || Sbjct 104192 ATGCAGATATTTGTGAAAACACTGACAGGGAAAACTATCACCCTTGAAGTAGAACCTTCA 104251 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||||||||| | ||| |||||| || ||||| || ||||| || || || Sbjct 104252 GACACTATCGAAAATGTAAAGGCCAAAATCCAGGATAAAGAGGGAATTCCTCCAGATCAG 104311 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || |||| ||||| ||||||||||||||||||| ||| || || || ||||| Sbjct 104312 CAACGTCTTATCTTTGCTGGCAAACAATTAGAAGATGGTCGTACATTGTCAGACTACAAC 104371 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || || ||||| || || || ||||| || |||| | |||||||||| Sbjct 104372 ATCCAGAAAGAGTCAACACTTCATTTGGTCTTAAGATTGAGAGGAGGAA 104420 Score = 122 bits (134), Expect = 8e-23 Identities = 167/231 (72%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || || | ||||| ||| | || ||| | |||||||| | || Sbjct 105104 ATGCAAATTTTCGTCAAAACACTTACCGGAAAAACAATAACACTTGAAGTGGAACCATCA 105163 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||||||||| || | |||| || | || || |||||||| ||||| || || Sbjct 105164 GACACTATCGAAAACGTAA---AAGCTAAGATCCAA-GATAAAGAAGGTATTCCTCCAGA 105219 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || || || |||| ||||| || |||||||||||||||| ||| || || ||||| Sbjct 105220 TCAGCAACGTCTTATCTTTGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCAGATTA 105279 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||| || || ||||| || || || ||||| || | || | |||||||| Sbjct 105280 CAACATCCAGAAAGAGTCGACACTTCATTTGGTCTTGAGATTGAGAGGAGG 105330 Score = 118 bits (130), Expect = 9e-22 Identities = 166/231 (72%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || || | || || ||| | || ||| | |||||||| | || Sbjct 104648 ATGCAAATTTTCGTCAAAACACTTACTGGAAAAACAATAACACTTGAAGTGGAACCATCA 104707 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||||||||| || | |||| || | || || |||||||| ||||| || || Sbjct 104708 GACACTATCGAAAACGTAA---AAGCCAAGATCCAA-GATAAAGAAGGTATTCCTCCAGA 104763 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || || || |||| ||||| || |||||||||||||||| ||| || || || || Sbjct 104764 TCAGCAACGTCTTATCTTTGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCGGACTA 104823 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||| || || ||||| ||||| || ||||| || | || | |||||||| Sbjct 104824 CAACATCCAGAAAGAGTCCACACTTCATTTGGTCTTGAGATTGAGAGGAGG 104874 Score = 104 bits (114), Expect = 2e-17 Identities = 125/168 (74%), Gaps = 8/168 (5%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || || | || || ||| | || ||| | |||||||| | ||| Sbjct 105332 ATGCAAATTTTCGTCAAAACACTTACAGGAAAAACAATAACACTTGAAGTGGAACCATCT 105391 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||||||||| || | |||| |||| ||| || |||||||| ||||| || || Sbjct 105392 GACACTATCGAAAACGTAA---AAGCTAAAATTCAA-GATAAAGAAGGTATTCCTCCAGA 105447 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCAC 25162 || || || |||| ||||| || |||||||||||||||| ||| || Sbjct 105448 TCAGCAACGTCTTATCTTTGCTGGGAAACAATTAGAAGATGGTCGTAC 105495 Score = 102 bits (112), Expect = 7e-17 Identities = 127/172 (74%), Gaps = 8/172 (5%) Strand=Plus/Plus Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||||||||| || | |||| |||| ||| || |||||||| ||||| || || Sbjct 105738 GACACTATCGAAAACGTAA---AAGCTAAAATTCAA-GATAAAGAAGGTATTCCTCCAGA 105793 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || || || |||| ||||| || |||||||||||||||| ||| || || || || Sbjct 105794 TCAGCAACGTCTTATCTTTGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCAGACTA 105853 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGA 25226 ||| || || ||||| || || || ||||||||| | | | ||||||||| Sbjct 105854 CAACATCCAGAAAGAGTCAACCCTTCATTTAGTGTTGCGTTTGAGAGGAGGA 105905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432934166190995