Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Modiolus_20philippinarum_20[genbank_20GCA_5F002080025.1_202017-04- 05] 74,573 sequences; 2,629,556,424 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq11254 226 3e-54 seq45074 143 3e-29 >seq11254 Length=169933 Score = 226 bits (250), Expect = 3e-54 Identities = 532/795 (67%), Gaps = 16/795 (2%) Strand=Plus/Minus Query 92923 TCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACG 92982 ||| || ||||||||||| |||||||| |||||| |||||||| | || Sbjct 70833 TCTGTCGGCTACAAATTCAATGTACTGCCACATCATGGTGTTGTTCATTCCAATCAGTTT 70774 Query 92983 TACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTC 93042 || |||| || || ||||| || |||| || || | |||||| || || ||| || Sbjct 70773 GACGGGTAACGCTTCCGTCAAAAACTCTTGTTCTATCAAAACGGCATCCGACACGATCTC 70714 Query 93043 TATTACTCTACTATTTGGTGGTTTTTGT---ACGACATAATTGTACATTAAGCACGCAAA 93099 ||| ||| | | | ||||| || | | | ||| | | || ||| ||||| Sbjct 70713 GTGTACCCTATTCTGCGAGGGTTTATGCTTCAGGTGGTCGTTGAAAAGTAGGCAGGCAAA 70654 Query 93100 GTCGGTA-TGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTA 93158 | | || ||||||||||| || | || | ||| |||||||| |||||||| || | Sbjct 70653 TT-GATAGTGTAAACCTTCATCCCTACTGATTAGCTCGTTGCTGAACGTTAAACCCGGCA 70595 Query 93159 ACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTT 93218 || ||||||||||| | |||||| |||| |||||||||||||||||| || || |||| Sbjct 70594 TGAGACCTCGTTTCTTTAACCAAAAAATTGCAGCAAAACTACCAGAAAAGAAGATGCCTT 70535 Query 93219 CCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTG---CGGAATTACTGCTGATCC 93275 | || | |||||||| | | || |||||||||| | | |||| | |||| Sbjct 70534 CTACCACGGCAAATGCTAGCAGTCGCACGGCAAAATTAGAATCAGAAT---CGTGTATCC 70478 Query 93276 ATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATA 93335 | |||| ||||| | ||| || |||| || ||||||| ||||| || ||||| | | Sbjct 70477 AATTTATGGCCCATTTGGCCTTCTTCTGAACGCAAGGTATGGTTTCTATTGCGTTTAGCA 70418 Query 93336 GGTAATCTCGCTCGT-CCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCA 93394 | ||| ||| | | |||| || | ||||| || | || ||||||||| Sbjct 70417 ACTGGTCT-TTACGTACAGGATCTTTAATAAAAGTATCTATCATCAAGCTGTACATTTCA 70359 Query 93395 GAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGC 93454 || || | || ||||| ||||| || |||||||| ||| || | ||||| | | ||| Sbjct 70358 GAGTGTATGTTTTCCATGGCAATCTGAAATCCGTAAAAAGATTTGGCTTCTGGAAACTGG 70299 Query 93455 ACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaa 93514 ||||| | | |||| |||| | | || ||||| || || || || ||| ||| ||||| Sbjct 70298 ACTTCATTACAAAACCTCTGTGCTAGGTTTTCGTTAACGATGCCGTCGCTTGCAGCAAAG 70239 Query 93515 aaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAA---GCTTATCCCAATCG 93571 ||||||| || | || || | || | || || | || | |||||| Sbjct 70238 AAAGCCAGAATGGACGAAATGAACTTGCGTTCTTTTTCGTTCAATTTGTTCTGCCAATCT 70179 Query 93572 GATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTG 93631 | |||| ||| | || || ||||| ||||||||| |||| || || | ||| Sbjct 70178 TGAACATCTACTGACAAGTCAACCTCTTCTACAGTCCAATACGAAGCCAGGGCCTGCTTG 70119 Query 93632 TACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCT 93691 ||||| | |||| ||| | ||| ||| || ||| || ||||| ||| |||| | Sbjct 70118 TACATCTTAAATATATCTGGGTATCTAATGGGGTATAAAACGAAACGGGAAGGATTATGT 70059 Query 93692 TTTAGTAACGGCTCT 93706 |||| || || ||| Sbjct 70058 TTTAACAAAGGTTCT 70044 >seq45074 Length=316632 Score = 143 bits (158), Expect = 3e-29 Identities = 173/233 (74%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 93475 TACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTAT 93534 ||| ||||||||||| || || ||||| || ||||| || ||||| | ||| || Sbjct 225508 TACCAGATTTTCATTTACAATTCCATCACTAGCAGCAAAGAATGCCAAAACATGGGAAAT 225567 Query 93535 AAAATGTTTCTCATCAT-CTTTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGA 93593 |||||| |||| |||| |||||| || ||||| | | ||||||||| | ||| | Sbjct 225568 GAAATGTCTCTCTTCATCCTTTAAAGTT-TCCCAGTGCACCAAATCTTTTGACAAATCAA 225626 Query 93594 CTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGAT 93653 ||||||| |||||||||| || |||||||| || |||||||| | ||| ||||| |||| Sbjct 225627 CTTCTTCTGCAGTCCAAAAAGAGGCTTCTGCCTTCTTGTACATTTGCCAAATGTCGTGAT 225686 Query 93654 ATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAACGGCTCT 93706 | |||||||| || | ||||| || ||| || || || | || |||||| Sbjct 225687 ACTGAATTGGGAAGACAACAAATCGTCGAGGATTGTCCTTCAACAATGGCTCT 225739 Score = 136 bits (150), Expect = 4e-27 Identities = 159/213 (75%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 93134 TCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA 93193 ||||| ||||| || | ||| || | | |||||| || |||||||||||||| | ||| Sbjct 223000 TCATTACTGAAGGTAAGACCAGGCATAATTCCTCGCTTTTTGAGCCAAAATATAGCTGCA 223059 Query 93194 AAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAA 93253 ||||||||||| |||||||| ||||| || |||||||||||||||| | || ||| || Sbjct 223060 AAACTACCAGAGAAAAATATCCCTTCAACTGCTGCAAATGCCACAACTCTCTCTGCATAA 223119 Query 93254 TTTGCGGAATTACTGC--TGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAG 93311 ||| | || | | | |||||||| | ||||||||| ||||| | || | ||| | Sbjct 223120 GCTGC--ATTTTTTTCATTTATCCATTTCAGAGCCCAATCTGCTTTCTCTTTTACACATG 223177 Query 93312 GTAGTGTTTCGATAGCGTTAAATAGGTAATCTC 93344 | | |||||| || || || || | | | |||| Sbjct 223178 GCATTGTTTCAATGGCATTGAACAAGAATTCTC 223210 Score = 82.4 bits (90), Expect = 8e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 ||||| || || || | ||| ||||||||||| |||| ||| ||||| || |||||| Sbjct 224463 ATGTAGGTGTCAATAAGTAGACTGTACATTTCAGAGTGGATATTTTCCATGGCTATTTGG 224522 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTC 93459 || || ||||||||||| ||||| || ||||||||| Sbjct 224523 AAGCCATAGAAACATCTTGCTTCAGTAGCCTGCACTTC 224560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556341715244520