Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Modiolus_20philippinarum_20[genbank_20GCA_5F002080025.1_202017-04- 05] 74,573 sequences; 2,629,556,424 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq35982 154 1e-32 seq9175 145 6e-30 seq11254 98.7 8e-16 >seq35982 Length=112201 Score = 154 bits (170), Expect = 1e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| |||||||| || || ||||| | ||||| ||||||||| | | Sbjct 104420 ATGCAAATTTTTGTCAAAACTTTGACAGGAAAAACAATTACTCTGGAAGTGGAACCATCT 104479 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | | ||| || || ||||| || || |||||||| || ||||| Sbjct 104480 GACACTATCGAAAACGTAAAAGCTAAGATCCAAGATAAAGAAGGTATTCCTCCAGATCAG 104539 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||||||||| ||||| || ||||| ||||| ||| || || | || || |||||| Sbjct 104540 CAACGTCTTATCTTTGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCAGACTACAAC 104599 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| ||||| || || | ||||| || ||| ||||| | |||||| Sbjct 104600 ATTCAGAAAGAGTCAACACTTCATTTGGTCTTGAGATTGAGAGGAGGT 104647 Score = 150 bits (166), Expect = 2e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || ||||| | || || ||||| | || |||||||||||| | | Sbjct 104876 ATGCAAATTTTCGTCAAAACACTTACTGGAAAAACAATAACACTTGAAGTGGAACCATCT 104935 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | | ||| ||||||||||| || || |||||||| || ||||| Sbjct 104936 GACACTATCGAAAACGTAAAAGCTAAAATTCAAGATAAAGAAGGTATTCCTCCAGATCAG 104995 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||||||||| ||||| || ||||| ||||| ||| || || | || ||||| ||| Sbjct 104996 CAACGTCTTATCTTTGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCGGATTATAAC 105055 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || ||||| ||||| | ||||| || ||| ||||| | |||||| Sbjct 105056 ATCCAGAAAGAGTCCACGCTTCATTTGGTCTTGAGATTGAGAGGAGGT 105103 Score = 145 bits (160), Expect = 6e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || ||||| | ||||| ||||| | || |||||||||||| | | Sbjct 105104 ATGCAAATTTTCGTCAAAACACTTACCGGAAAAACAATAACACTTGAAGTGGAACCATCA 105163 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | | ||| || || ||||| || || |||||||| || ||||| Sbjct 105164 GACACTATCGAAAACGTAAAAGCTAAGATCCAAGATAAAGAAGGTATTCCTCCAGATCAG 105223 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||||||||| ||||| || ||||| ||||| ||| || || | || ||||||||| Sbjct 105224 CAACGTCTTATCTTTGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCAGATTACAAC 105283 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || ||||| || || | ||||| || ||| ||||| | |||||| Sbjct 105284 ATCCAGAAAGAGTCGACACTTCATTTGGTCTTGAGATTGAGAGGAGGT 105331 Score = 141 bits (156), Expect = 8e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || ||||| | || || ||||| | || |||||||||||| | | Sbjct 104648 ATGCAAATTTTCGTCAAAACACTTACTGGAAAAACAATAACACTTGAAGTGGAACCATCA 104707 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | | ||| || || ||||| || || |||||||| || ||||| Sbjct 104708 GACACTATCGAAAACGTAAAAGCCAAGATCCAAGATAAAGAAGGTATTCCTCCAGATCAG 104767 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||||||||| ||||| || ||||| ||||| ||| || || | || || |||||| Sbjct 104768 CAACGTCTTATCTTTGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCGGACTACAAC 104827 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || ||||| ||||| | ||||| || ||| ||||| | |||||| Sbjct 104828 ATCCAGAAAGAGTCCACACTTCATTTGGTCTTGAGATTGAGAGGAGGT 104875 Score = 134 bits (148), Expect = 1e-26 Identities = 169/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 22214 TAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAA 22273 || ||||||| || ||||| ||||| | || || ||||| |||| |||||||| ||| Sbjct 104187 TACAGATGCAGATATTTGTGAAAACACTGACAGGGAAAACTATCACCCTTGAAGTAGAAC 104246 Query 22274 CCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCG 22333 | | || || | || || | || ||||| || || || ||||| ||||| || | Sbjct 104247 CTTCAGACACTATCGAAAATGTAAAGGCCAAAATCCAGGATAAAGAGGGAATTCCTCCAG 104306 Query 22334 ATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATT 22393 |||| ||||||||||| ||||| |||||||| ||||| ||| || || | || || | Sbjct 104307 ATCAGCAACGTCTTATCTTTGCTGGCAAACAATTAGAAGATGGTCGTACATTGTCAGACT 104366 Query 22394 ACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||||| || ||||| || || | ||||| || || ||||| | ||||| Sbjct 104367 ACAACATCCAGAAAGAGTCAACACTTCATTTGGTCTTAAGATTGAGAGGAGG 104418 Score = 123 bits (136), Expect = 2e-23 Identities = 113/143 (79%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 ||||||||||| || || |||||||| || ||||| ||||||||||| ||||| || ||| Sbjct 105762 AAAATTCAAGATAAAGAAGGTATTCCTCCAGATCAGCAACGTCTTATCTTTGCTGGTAAA 105821 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 || ||||| ||| || || | || || |||||||| || ||||| || ||| | ||| Sbjct 105822 CAATTAGAAGATGGTCGTACATTGTCAGACTACAACATCCAGAAAGAGTCAACCCTTCAT 105881 Query 22423 TTAGTTTTGCGATTGCGCGGAGG 22445 ||||| ||||| ||| | ||||| Sbjct 105882 TTAGTGTTGCGTTTGAGAGGAGG 105904 Score = 111 bits (122), Expect = 1e-19 Identities = 118/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || ||||| | || || ||||| | || |||||||||||| | | Sbjct 105332 ATGCAAATTTTCGTCAAAACACTTACAGGAAAAACAATAACACTTGAAGTGGAACCATCT 105391 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | | ||| ||||||||||| || || |||||||| || ||||| Sbjct 105392 GACACTATCGAAAACGTAAAAGCTAAAATTCAAGATAAAGAAGGTATTCCTCCAGATCAG 105451 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGAT 22374 ||||||||||| ||||| || ||||| ||||| ||| Sbjct 105452 CAACGTCTTATCTTTGCTGGGAAACAATTAGAAGAT 105487 >seq9175 Length=65522 Score = 145 bits (160), Expect = 6e-30 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| |||||||| || ||||| || ||||||| ||||| ||| | | Sbjct 22880 ATGCAAATCTTTGTCAAAACTTTGACTGGTAAGACCATCACTCTAGAAGTTGAACCATCA 22821 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || ||||| ||||| || ||||| ||||| |||||||| || ||| Sbjct 22820 GATACAATTGAAAATGTCAAAGCTAAAATCCAGGACAAAGAGGGAATTCCACCAGACCAA 22761 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || ||||| || ||||| | || ||| | || | ||||| |||||| Sbjct 22760 CAGAGATTGATCTTTGCTGGAAAACAACTTGAAGATGGTAGAACACTGTCCGACTACAAC 22701 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 ||||| ||||||||||| | |||||||| ||||| Sbjct 22700 ATTCAGAAAGAATCCACACTCCATTTAGTATTGCG 22666 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || |||||||| || || || || ||||||| ||||| ||| | | Sbjct 23336 ATGCAAATCTTCGTCAAAACTTTGACTGGCAAGACCATCACTCTAGAAGTTGAACCATCA 23277 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || ||||| ||||| || ||||| ||||| |||||||| || ||| Sbjct 23276 GATACAATTGAGAATGTCAAAGCTAAAATCCAGGACAAAGAGGGAATTCCACCAGACCAA 23217 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || ||||| || ||||| | || ||| | || | || || |||||| Sbjct 23216 CAGAGATTGATCTTTGCTGGAAAACAACTTGAAGATGGTAGAACACTATCTGACTACAAC 23157 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| |||||||| || | ||| | || | || | || |||||| Sbjct 23156 ATTCAGAAAGAATCAACACTCCATCTTGTACTCCGTCTCCGAGGAGGT 23109 >seq11254 Length=169933 Score = 98.7 bits (108), Expect = 8e-16 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 117069 GCTTTCGCCATTGTCGAAGGCATTTTCTTTTCAGGCAGTTTTGCTGCCATATTTTTTATC 117128 || || ||| | || |||||||| |||||||| || ||||||||||| || |||| | Sbjct 70519 GCATTTGCCGTGGTAGAAGGCATCTTCTTTTCTGGTAGTTTTGCTGCAATTTTTTGGTTA 70578 Query 117129 AAGACCAAAGGTCTAATGCCGGGTCTAACGTTTAGCAACGAATTAATATCGCGTGACGAA 117188 |||| |||||| ||||||||| ||||||| |||||||| |||| | || ||| Sbjct 70579 AAGAAACGAGGTCTCATGCCGGGTTTAACGTTCAGCAACGAGCTAATCAGTAGGGATGAA 70638 Query 117189 GGTTTACAC 117197 ||||||||| Sbjct 70639 GGTTTACAC 70647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419346526665745