Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Modiolus_20philippinarum_20[genbank_20GCA_5F002080025.1_202017-04- 05] 74,573 sequences; 2,629,556,424 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq35982 163 5e-35 seq39591 86.0 1e-11 seq63802 84.2 4e-11 >seq35982 Length=112201 Score = 163 bits (180), Expect = 5e-35 Identities = 164/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 68249 CAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATC 68308 ||| ||||| || |||||||||||||| |||||||||||||| || | ||| | ||||| Sbjct 105088 CAAGACCAAATGAAGCGTGGACTCTTTCTGGATGTTATAATCCGACAATGTACGACCATC 105029 Query 68309 TTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTC 68368 |||||| || || || || || || || | ||| || || || ||||| ||||| || || Sbjct 105028 TTCTAATTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGAGGAATACCTTCTTTATC 104969 Query 68369 TTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGT 68428 |||||| || || || ||| ||||| ||||| | || ||| ||||| | || || || Sbjct 104968 TTGAATTTTAGCTTTTACGTTTTCGATAGTGTCAGATGGTTCCACTTCAAGTGTTATTGT 104909 Query 68429 TTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||| || || || |||||||| || ||||| Sbjct 104908 TTTTCCAGTAAGTGTTTTGACGAAAATTTGCAT 104876 Score = 154 bits (170), Expect = 3e-32 Identities = 162/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 68249 CAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATC 68308 ||| ||||| || || ||||||||||| |||||||| || || || | ||| | ||||| Sbjct 104860 CAAGACCAAATGAAGTGTGGACTCTTTCTGGATGTTGTAGTCCGACAATGTACGACCATC 104801 Query 68309 TTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTC 68368 |||||| || || || || || || || | ||| || || || ||||| ||||| || || Sbjct 104800 TTCTAATTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGAGGAATACCTTCTTTATC 104741 Query 68369 TTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGT 68428 ||| ||||| || || ||| ||||| ||||||| || ||| ||||| | || || || Sbjct 104740 TTGGATCTTGGCTTTTACGTTTTCGATAGTGTCTGATGGTTCCACTTCAAGTGTTATTGT 104681 Query 68429 TTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||| || || || |||||||| || ||||| Sbjct 104680 TTTTCCAGTAAGTGTTTTGACGAAAATTTGCAT 104648 Score = 154 bits (170), Expect = 3e-32 Identities = 162/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 68249 CAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATC 68308 ||| ||||| || || || |||||||| |||||||| ||||| || | ||| | ||||| Sbjct 105316 CAAGACCAAATGAAGTGTCGACTCTTTCTGGATGTTGTAATCTGACAATGTACGACCATC 105257 Query 68309 TTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTC 68368 |||||| || || || || || || || | ||| || || || ||||| ||||| || || Sbjct 105256 TTCTAATTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGAGGAATACCTTCTTTATC 105197 Query 68369 TTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGT 68428 ||| ||||| || || ||| ||||| ||||||| || ||| ||||| | || || || Sbjct 105196 TTGGATCTTAGCTTTTACGTTTTCGATAGTGTCTGATGGTTCCACTTCAAGTGTTATTGT 105137 Query 68429 TTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||| || || || |||||||| || ||||| Sbjct 105136 TTTTCCGGTAAGTGTTTTGACGAAAATTTGCAT 105104 Score = 140 bits (154), Expect = 6e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 68250 AATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCT 68309 || ||||| || || || |||||||| |||||||| || || || | ||| | |||||| Sbjct 104403 AAGACCAAATGAAGTGTTGACTCTTTCTGGATGTTGTAGTCTGACAATGTACGACCATCT 104344 Query 68310 TCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCT 68369 ||||| || || || || || || || | ||| || || || ||||| || || || || Sbjct 104343 TCTAATTGTTTGCCAGCAAAGATAAGACGTTGCTGATCTGGAGGAATTCCCTCTTTATCC 104284 Query 68370 TGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTT 68429 || || || ||||| || ||||| ||||||| | ||||||||| | |||||| ||| Sbjct 104283 TGGATTTTGGCCTTTACATTTTCGATAGTGTCTGAAGGTTCTACTTCAAGGGTGATAGTT 104224 Query 68430 TTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || || || || || || ||||||||||| Sbjct 104223 TTCCCTGTCAGTGTTTTCACAAATATCTGCAT 104192 Score = 138 bits (152), Expect = 2e-27 Identities = 159/214 (74%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 68249 CAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATC 68308 ||| ||||| || || || |||||||| || ||||| || || || | ||| | ||||| Sbjct 104632 CAAGACCAAATGAAGTGTTGACTCTTTCTGAATGTTGTAGTCTGACAATGTACGACCATC 104573 Query 68309 TTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTC 68368 |||||| || || || || || || || | ||| || || || ||||| ||||| || || Sbjct 104572 TTCTAATTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGAGGAATACCTTCTTTATC 104513 Query 68369 TTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGT 68428 ||| ||||| || || ||| ||||| ||||| | || ||| ||||||| || || || Sbjct 104512 TTGGATCTTAGCTTTTACGTTTTCGATAGTGTCAGATGGTTCCACTTCCAGAGTAATTGT 104453 Query 68429 TTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 |||||| || | || ||||| || || |||||| Sbjct 104452 TTTTCCTGTCAAAGTTTTGACAAAAATTTGCATT 104419 Score = 114 bits (126), Expect = 2e-20 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 ||||||||||| || ||||| || || || || | ||| || || || ||||| ||||| Sbjct 105489 CCATCTTCTAATTGTTTCCCAGCAAAGATAAGACGTTGCTGATCTGGAGGAATACCTTCT 105430 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 || |||||||| || || || ||| ||||| ||||| | || ||| ||||| | || Sbjct 105429 TTATCTTGAATTTTAGCTTTTACGTTTTCGATAGTGTCAGATGGTTCCACTTCAAGTGTT 105370 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || |||||||| || || || |||||||| || ||||| Sbjct 105369 ATTGTTTTTCCTGTAAGTGTTTTGACGAAAATTTGCAT 105332 Score = 107 bits (118), Expect = 4e-18 Identities = 130/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 68225 ATTTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTT 68284 |||| | | |||||| | | ||||| || || || || || |||||||| |||||||| Sbjct 105914 ATTTCATTGTCCTCCTCTCAAACGCAACACTAAATGAAGGGTTGACTCTTTCTGGATGTT 105855 Query 68285 ATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTG 68344 || || || | ||| | ||||||||||| || || || || || || || | ||| || Sbjct 105854 GTAGTCTGACAATGTACGACCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGCTG 105795 Query 68345 GTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTC 68401 || || ||||| ||||| || |||||||| || || || ||| ||||| ||||| Sbjct 105794 ATCTGGAGGAATACCTTCTTTATCTTGAATTTTAGCTTTTACGTTTTCGATAGTGTC 105738 >seq39591 Length=213653 Score = 86.0 bits (94), Expect = 1e-11 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 68259 TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGC 68318 || || || || ||||| ||||||||||||||||| | |||||| ||||| || ||||| Sbjct 29180 TGAAGGGTAGATTCTTTCTGGATGTTATAATCGGACAATGTCCTTCCATCCTCCAACTGT 29121 Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCT 68360 || || || || || | |||||| || || || ||||| ||| Sbjct 29120 TTACCAGCAAAGATCAATCTTTGCTGATCTGGGGGAATACCT 29079 >seq63802 Length=43549 Score = 84.2 bits (92), Expect = 4e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 ||||||||||||||||| ||||||||||| || |||||||| | || || || || Sbjct 12690 CCTTCCTTGTCTTGAATTTTTGCCTTGACATTTTCAATGGTGTCAGATGGCTCCACCTCT 12631 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | ||| ||||| || ||||| | ||||| || || |||||||| Sbjct 12630 AGGGTAATGGTCTTCCCCGTCAATGTCTTCACAAAGATCTGCAT 12587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 920763298159560