Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Modiolus_20philippinarum_20[genbank_20GCA_5F002080025.1_202017-04- 05] 74,573 sequences; 2,629,556,424 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq11254 127 4e-24 >seq11254 Length=169933 Score = 127 bits (140), Expect = 4e-24 Identities = 467/723 (65%), Gaps = 14/723 (2%) Strand=Plus/Plus Query 42419 CATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTT 42478 ||| ||||| ||||| || || |||||||| || || || ||||| || ||||| Sbjct 70227 CATTCTGGCTTTCTTTGCTGCAAGCGACGGCATCGTTAACGAAAACCTAGCACAGAGGTT 70286 Query 42479 CATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGA 42538 || || || |||| || || | || ||||| || ||||| ||||| || Sbjct 70287 TTGTAATGAAGTCCAGTTTCCAGAAGCCAAATCTTTTTACGGATTTCAGATTGCCATGGA 70346 Query 42539 GAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGA 42598 ||| | |||||||| ||||| | || | | || | || ||||| || Sbjct 70347 AAACATACACTCTGAAATGTACAGCTTGATGATAGATACTTTTATTAAAGATCCTGTA-- 70404 Query 42599 GCGTAACGGGCTGTTC---AAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGA 42655 ||||| | | ||| || || || || || || || ||| | |||||||||| | Sbjct 70405 -CGTAAAGACCAGTTGCTAAACGCAATAGAAACCATACCTTGCGTTCAGAAGAAGGCCAA 70463 Query 42656 CTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTT 42715 ||||| | || ||||| | | | || | | || | || | | ||| |||| || Sbjct 70464 ATGGGCCATAAATTGGATACACGATTCTGATTCTAATTTTGCCGTGCGACTGCTAGCATT 70523 Query 42716 TACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCA 42775 | ||| || || ||||||||||| || || || || | || || ||| | ||| | Sbjct 70524 TGCCGTGGTAGAAGGCATCTTCTTTTCTGGTAGTTTTGCTGCAATTTTTTGGTTAAAGAA 70583 Query 42776 GA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGC 42834 |||| || ||||| || | || ||| ||||| || ||||| ||||| || || Sbjct 70584 ACGAGGTCTC-ATGCCGGGTTTAACGTTCAGCAACGAGCTAATCAGTAGGGATGAAGGTT 70642 Query 42835 TGCATAGGGACTTTGCCTGCCTCCTGTTC-TCGAGCCACCTCAGGCACAAGCCCTCGAAG 42893 | || | ||||||||||| || ||| ||| |||||| | ||| || |||||| || Sbjct 70643 TACACTATCAATTTGCCTGCCTACTTTTCAACGA-CCACCTGAAGCATAAACCCTCGCAG 70701 Query 42894 GAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAG 42953 | |||| | | ||| | |||| ||||| ||| || | ||||| | ||| | Sbjct 70702 AATAGGGTACACGAGATCGTGTCGGATGCCGTTTTGATAGAACAAGAGTTTTTGACGGAA 70761 Query 42954 TCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTAC 43013 || | ||||| ||| | || |||||| || | | ||||| ||||||| | | Sbjct 70762 GCGTTACCCGTCAAACTGATTGGAATGAACAACACCATGATGTGGCAGTACATTGAATTT 70821 Query 43014 GTCGCCGACCATCTCCTGTGCCAGATGGGTCTCA--GCCGCCTCTACAACACGCCGTGCC 43071 || |||||| || | || ||||| | | | || ||||| || | | Sbjct 70822 GTAGCCGACAGACTGC--TGACAGATTTGAATTATGAAAAACTGTACAATTCGTCAAATC 70879 Query 43072 CCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCG 43131 | || | || |||||||||||||| |||| ||||| ||||||||||| || ||| | | Sbjct 70880 CGTTTAATTTCATGGAGAACATCTCCCTGGAAGGCAAAACCAACTTTTTTGAAAAGAGGG 70939 Query 43132 TCG 43134 ||| Sbjct 70940 TCG 70942 Score = 104 bits (114), Expect = 4e-17 Identities = 431/666 (65%), Gaps = 27/666 (4%) Strand=Plus/Minus Query 243877 GTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCTGCGGCCATGGTGATGAGGTC 243936 |||||| || || ||| || ||| |||| || | || |||||| |||| || Sbjct 73263 GTTGAGCGATTGCGACTGATCTACGTAGGGGGCTCTGTCGCATGCCATGTCAATGACGTT 73204 Query 243937 CTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGAACCCTTC 243996 ||| ||||| || || || | |||||||||| | ||| | ||||| ||| | | | Sbjct 73203 CTTTTGAGAGATTTCCCACACGGTCTTGTAGAGGTCCTTAATGTGCTGGGGTATACTGGC 73144 Query 243997 GATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAG 244056 ||||| ||||| || || || | | |||| || | | | || ||||||||||| Sbjct 73143 AATGTTTTGCACGGAACCTCCGTTGGCAATGATCTCGTTTTTGAGGTCGTCGTTCCACAG 73084 Query 244057 GCCCA-AGCGCTCCAGCGCCTCG-ACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGAC 244114 |||| | ||| ||| | |||| | ||| || ||| ||||||||||||||||| ||| Sbjct 73083 TCCCAGATCGC-ACAG-GTCTCGAATCAGATGATGGTTGACCACCTGAAACTCTCCAGAC 73026 Query 244115 AGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGT 244174 || || | | ||| | ||| || | || ||||| || |||| |||| Sbjct 73025 AGGACCCTTCTGGTGTAAATGTTACTAGTATAAGGTTCGATCGATTCGTTGTTACCCAAG 72966 Query 244175 ATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGC 244234 | || ||||| |||| || ||||| || | || |||||||| | || ||||| Sbjct 72965 AGTTGTGCCGTTGTCGCTGTGGGCATTACCGCCGTCAATAGACTGTTGCGAACACCGTG- 72907 Query 244235 CTCTG-GATGCGGAGTCTGAGCTCGTTCCAGTCCCACATG----CCCGAGAGGTCCTCGC 244289 || | || | ||| || || ||| | | | ||| ||| || |||| Sbjct 72906 TTCGGCAATATCGCATCTCAGTCTGTCCCAAT-CAAGATGACTACCC------TCGTCGC 72854 Query 244290 GTTTGAGGCC---CCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGT 244346 || |||| ||||||||| |||||| | || ||||| ||||| || ||||| | Sbjct 72853 ---TGTGGCCCTTCCACATGTCCTGCTGCAGTATTCCTTTGCTTACGGGACTTCCCTCAT 72797 Query 244347 AGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGT 244406 | | | | |||| | |||| | |||||| |||| | |||||| ||| Sbjct 72796 AAGAATAATGCGTCCCGTACTCTTTAGCCAATTGACAGCTGGCGTCCAAGGCGGCAAAGT 72737 Query 244407 AGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCA-GGTGAAGGGGAT- 244464 |||||| |||||||| |||||| | || ||| | ||| | | || |||| Sbjct 72736 AGATGGCTTCGAAGATTCGCTTGTTTAATTCTTTGGC--TTCCGAACTTTCAAACGGATA 72679 Query 244465 GCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCG 244524 ||| | ||||| |||||| | ||||||||||| || ||||||| ||||||| Sbjct 72678 TTTCATTAAAATGAACGTGTCGGCTAAACCCTGCACGCCTATTCCGATGGCCCTGTGTCT 72619 Query 244525 CTTGTT 244530 | |||| Sbjct 72618 CGTGTT 72613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943458922410480