Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Modiolus_20philippinarum_20[genbank_20GCA_5F002080025.1_202017-04- 05] 74,573 sequences; 2,629,556,424 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq35982 140 8e-28 seq9175 134 3e-26 >seq35982 Length=112201 Score = 140 bits (154), Expect = 8e-28 Identities = 148/194 (76%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || ||||| | | || || || |||||||||||||| || || ||| Sbjct 104382 TCTTTCTGGATGTTGTAGTCTGACAATGTACGACCATCTTCTAATTGTTTGCCAGCAAAG 104323 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || ||||| || ||| ||||| ||||| ||||||||||||||||| || || || Sbjct 104322 ATAAGACGTTGCTGA---TCTGGAGGAATTCCCTCTTTATCCTGGATTTTGGCCTTTACA 104266 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 ||||| |||| || | ||||||||| || ||||| || ||||| ||||| || || Sbjct 104265 TTTTCGATAGTGTCTGAAGGTTCTACTTCAAGGGTGATAGTTTTCCCTGTCAGTGTTTTC 104206 Query 288460 ACGAATATCTGCAT 288473 || ||||||||||| Sbjct 104205 ACAAATATCTGCAT 104192 Score = 127 bits (140), Expect = 5e-24 Identities = 153/207 (74%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 288270 ATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTG 288329 ||||| |||| ||||| ||||| ||||| || | | || || || ||||||||||| Sbjct 105079 ATGAAGCGTGGACTCTTTCTGGATGTTATAATCCGACAATGTACGACCATCTTCTAATTG 105020 Query 288330 TTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGAT 288386 ||| || || ||||| ||||| || ||| ||||| || ||||||||||| || || Sbjct 105019 TTTACCAGCAAAGATAAGACGTTGCTGA---TCTGGAGGAATACCTTCTTTATCTTGAAT 104963 Query 288387 TTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCC 288446 ||| ||||| |||||||| |||| || | ||| ||||| || || || || || || Sbjct 104962 TTTAGCTTTTACGTTTTCGATAGTGTCAGATGGTTCCACTTCAAGTGTTATTGTTTTTCC 104903 Query 288447 GGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || |||||||| || ||||| Sbjct 104902 AGTAAGTGTTTTGACGAAAATTTGCAT 104876 Score = 122 bits (134), Expect = 2e-22 Identities = 152/207 (73%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 288270 ATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTG 288329 ||||| ||| ||||| ||||| || ||||| | | || || || ||||||||||| Sbjct 104851 ATGAAGTGTGGACTCTTTCTGGATGTTGTAGTCCGACAATGTACGACCATCTTCTAATTG 104792 Query 288330 TTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGAT 288386 ||| || || ||||| ||||| || ||| ||||| || ||||||||||| ||||| Sbjct 104791 TTTACCAGCAAAGATAAGACGTTGCTGA---TCTGGAGGAATACCTTCTTTATCTTGGAT 104735 Query 288387 TTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCC 288446 || ||||| |||||||| |||| || | ||| ||||| || || || || || || Sbjct 104734 CTTGGCTTTTACGTTTTCGATAGTGTCTGATGGTTCCACTTCAAGTGTTATTGTTTTTCC 104675 Query 288447 GGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || |||||||| || ||||| Sbjct 104674 AGTAAGTGTTTTGACGAAAATTTGCAT 104648 Score = 122 bits (134), Expect = 2e-22 Identities = 144/194 (74%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || || || | | || || || |||||||||||||| || || ||| Sbjct 105294 TCTTTCTGGATGTTGTAATCTGACAATGTACGACCATCTTCTAATTGTTTACCAGCAAAG 105235 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || ||||| || ||| ||||| || ||||||||||| ||||| || ||||| ||| Sbjct 105234 ATAAGACGTTGCTGA---TCTGGAGGAATACCTTCTTTATCTTGGATCTTAGCTTTTACG 105178 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 ||||| |||| || | ||| ||||| || || || || || ||||| || || ||| Sbjct 105177 TTTTCGATAGTGTCTGATGGTTCCACTTCAAGTGTTATTGTTTTTCCGGTAAGTGTTTTG 105118 Query 288460 ACGAATATCTGCAT 288473 ||||| || ||||| Sbjct 105117 ACGAAAATTTGCAT 105104 Score = 118 bits (130), Expect = 2e-21 Identities = 144/195 (74%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| || || || ||||| | | || || || |||||||||||||| || || ||| Sbjct 104610 TCTTTCTGAATGTTGTAGTCTGACAATGTACGACCATCTTCTAATTGTTTACCAGCAAAG 104551 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || ||||| || ||| ||||| || ||||||||||| ||||| || ||||| ||| Sbjct 104550 ATAAGACGTTGCTGA---TCTGGAGGAATACCTTCTTTATCTTGGATCTTAGCTTTTACG 104494 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 ||||| |||| || | ||| ||||| || || || || || || |||| ||| ||| Sbjct 104493 TTTTCGATAGTGTCAGATGGTTCCACTTCCAGAGTAATTGTTTTTCCTGTCAAAGTTTTG 104434 Query 288460 ACGAATATCTGCATT 288474 || || || |||||| Sbjct 104433 ACAAAAATTTGCATT 104419 Score = 113 bits (124), Expect = 1e-19 Identities = 133/179 (74%), Gaps = 6/179 (3%) Strand=Plus/Minus Query 288298 TAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGA 288357 ||||| | | ||| || || |||||||||||||| || || ||||| ||||| || ||| Sbjct 105507 TAGTCTGACAACGTACGACCATCTTCTAATTGTTTCCCAGCAAAGATAAGACGTTGCTGA 105448 Query 288358 GAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCG 288414 ||||| || ||||||||||| || ||||| ||||| |||||||| |||| || Sbjct 105447 ---TCTGGAGGAATACCTTCTTTATCTTGAATTTTAGCTTTTACGTTTTCGATAGTGTCA 105391 Query 288415 CTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | ||| ||||| || || || || || || || || || |||||||| || ||||| Sbjct 105390 GATGGTTCCACTTCAAGTGTTATTGTTTTTCCTGTAAGTGTTTTGACGAAAATTTGCAT 105332 Score = 96.9 bits (106), Expect = 8e-15 Identities = 100/130 (77%), Gaps = 6/130 (5%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || ||||| | | || || || |||||||||||||| || || ||| Sbjct 105868 TCTTTCTGGATGTTGTAGTCTGACAATGTACGACCATCTTCTAATTGTTTACCAGCAAAG 105809 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || ||||| || ||| ||||| || ||||||||||| || ||||| ||||| ||| Sbjct 105808 ATAAGACGTTGCTGA---TCTGGAGGAATACCTTCTTTATCTTGAATTTTAGCTTTTACG 105752 Query 288400 TTTTCTATAG 288409 ||||| |||| Sbjct 105751 TTTTCGATAG 105742 >seq9175 Length=65522 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || ||||| | ||||| ||||| | || |||||| || ||||| ||||| | Sbjct 22882 CCTCCTCGGAGACGGAGTACAAGATGGAGTGTTGATTCTTTCTGAATATTGTAGTCAGAT 22941 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | || ||||| | ||||||||| || ||||||| | |||||| ||| Sbjct 22942 AGTGTTCTACCATCTTCAAGTTGTTTTCCGGCAAAGATCAATCTCTGTTGGTCTGGTGGA 23001 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 ||||| ||||| ||||||||||| ||||| || || || || | ||| | ||| ||| Sbjct 23002 ATTCCCTCTTTGTCCTGGATTTTAGCTTTGACATTCTCAATTGTATCTGATGGTTCAACT 23061 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || |||||||| ||||| || |||| || |||||||| || ||||| Sbjct 23062 TCTAGCGTGATGGTCTTGCCAGTCAATGTTTTGACGAAGATTTGCAT 23108 Score = 132 bits (146), Expect = 1e-25 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 288243 ATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTC 288302 || |||||| || || | | ||| | ||| | ||| |||||| || || || ||||| Sbjct 22650 ATTTCCACCACGTAGACGCAATACTAAATGGAGTGTGGATTCTTTCTGAATGTTGTAGTC 22709 Query 288303 GGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATC 288362 || || || | || ||||| | ||||||||| || ||||||| | |||||| Sbjct 22710 GGACAGTGTTCTACCATCTTCAAGTTGTTTTCCAGCAAAGATCAATCTCTGTTGGTCTGG 22769 Query 288363 TGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 ||| ||||| ||||| ||||||||||| ||||| || ||||| || | ||| | ||| Sbjct 22770 TGGAATTCCCTCTTTGTCCTGGATTTTAGCTTTGACATTTTCAATTGTATCTGATGGTTC 22829 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || ||||| ||||| || |||| ||| ||||| || || ||||| Sbjct 22830 AACTTCTAGAGTGATGGTCTTACCAGTCAAAGTTTTGACAAAGATTTGCAT 22880 Score = 131 bits (144), Expect = 4e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || ||||| | ||||| ||||| | || |||||| || || || ||||| | Sbjct 23110 CCTCCTCGGAGACGGAGTACAAGATGGAGTGTTGATTCTTTCTGAATGTTGTAGTCAGAT 23169 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | || ||||| | ||||||||| || ||||||| | |||||| ||| Sbjct 23170 AGTGTTCTACCATCTTCAAGTTGTTTTCCAGCAAAGATCAATCTCTGTTGGTCTGGTGGA 23229 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 ||||| ||||| ||||||||||| ||||| || || || || | ||| | ||| ||| Sbjct 23230 ATTCCCTCTTTGTCCTGGATTTTAGCTTTGACATTCTCAATTGTATCTGATGGTTCAACT 23289 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| || |||| ||| |||||||| || ||||| Sbjct 23290 TCTAGAGTGATGGTCTTGCCAGTCAAAGTTTTGACGAAGATTTGCAT 23336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178527279665494