Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Modiolus_20philippinarum_20[genbank_20GCA_5F002080025.1_202017-04- 05] 74,573 sequences; 2,629,556,424 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq43241 100 3e-16 seq37902 98.7 1e-15 seq17018 96.9 4e-15 seq37972 93.3 5e-14 >seq43241 Length=222632 Score = 100 bits (110), Expect = 3e-16 Identities = 75/88 (85%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 57000 AAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTC 57059 |||| | |||| |||| | |||||||||| ||||||||||||||||||||| ||||| Sbjct 134709 AAATGTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTG 134650 Query 57060 ACCACTATACTACCGAGGATTGAATATA 57087 ||||||||||||||||||| | || ||| Sbjct 134649 ACCACTATACTACCGAGGACTTAAAATA 134622 >seq37902 Length=17816 Score = 98.7 bits (108), Expect = 1e-15 Identities = 69/79 (87%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 57000 AAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTC 57059 |||| | |||| |||| | |||||||||| ||||||||||||||||||||| ||||| Sbjct 7823 AAATGTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTG 7764 Query 57060 ACCACTATACTACCGAGGA 57078 ||||||||||||||||||| Sbjct 7763 ACCACTATACTACCGAGGA 7745 Score = 95.1 bits (104), Expect = 1e-14 Identities = 71/82 (87%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 56998 AAAAATTTTC-TCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 || |||| || ||| |||| | |||||||||| ||||||||||||||||||||| ||| Sbjct 756 AATAATTATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 697 Query 57057 CTCACCACTATACTACCGAGGA 57078 || ||||||||||||||||||| Sbjct 696 CTGACCACTATACTACCGAGGA 675 Score = 95.1 bits (104), Expect = 1e-14 Identities = 71/82 (87%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 56998 AAAAATTTTC-TCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 || |||| || ||| |||| | |||||||||| ||||||||||||||||||||| ||| Sbjct 8808 AATAATTATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 8749 Query 57057 CTCACCACTATACTACCGAGGA 57078 || ||||||||||||||||||| Sbjct 8748 CTGACCACTATACTACCGAGGA 8727 >seq17018 Length=107603 Score = 96.9 bits (106), Expect = 4e-15 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||| || | |||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 13020 AAATATATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 12961 Query 57058 TCACCACTATACTACCGAGGA 57078 | ||||||||||||||||||| Sbjct 12960 TGACCACTATACTACCGAGGA 12940 >seq37972 Length=77724 Score = 93.3 bits (102), Expect = 5e-14 Identities = 74/87 (85%), Gaps = 3/87 (3%) Strand=Plus/Plus Query 56995 ATGAAAA--ATTTTC-TCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGG 57051 ||||||| ||| || ||| |||| | |||||||||| ||||||||||||||||| ||| Sbjct 69303 ATGAAAATAATTATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGACGG 69362 Query 57052 ACATACTCACCACTATACTACCGAGGA 57078 ||||| ||||||||||||||||||| Sbjct 69363 GGATACTGACCACTATACTACCGAGGA 69389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542706437398320