Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Modiolus_20philippinarum_20[genbank_20GCA_5F002080025.1_202017-04- 05] 74,573 sequences; 2,629,556,424 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq11254 109 5e-19 seq9175 109 5e-19 >seq11254 Length=169933 Score = 109 bits (120), Expect = 5e-19 Identities = 298/454 (66%), Gaps = 2/454 (0%) Strand=Plus/Minus Query 145722 GACGGTGAACTGCGTCGCTTGAGCGGCCGGTTTTGTGCGCAGATAGTACATGCCGGTCTT 145781 |||||| |||| | | || || || |||||||||||||| || ||||| || ||||| Sbjct 73392 GACGGTATACTGAATGGGTTTCGCAGCAGGTTTTGTGCGCAGGTAATACATTCCCGTCTT 73333 Query 145782 GAGCTGTTTCTGCCACGTGTAAAAGTGTATGCTCGACATGACCGAGTACGTGGGTTCGGC 145841 | || ||| ||| || ||| || ||||||| || ||||| ||| ||||| Sbjct 73332 AATCTCCCTCTTCCAGCCGTGAAAATGCATGCTCGTCAACTTTTCGTACGAGGGATCGGC 73273 Query 145842 GACAAACAAATTTAGAGATTGGCTCTGATCAATGAAAGGAGCCCGGTCGGCGGCCATGTC 145901 | | || || ||||| |||||| | | | || || | |||| |||||||| Sbjct 73272 AATGTGAATGTTGAGCGATTGCGACTGATCTACGTAGGGGGCTCTGTCGCATGCCATGTC 73213 Query 145902 TATCATGCACTTTGATTTAATTTCCCATGCGGTTTTAAAGAGATCCTTGACGTGCTGGGG 145961 || | | |||| |||||||| |||| || |||| ||||| | ||||||||| Sbjct 73212 AATGACGTTCTTTTGAGAGATTTCCCACACGGTCTTGTAGAGGTCCTTAATGTGCTGGGG 73153 Query 145962 TATTTCGTCAATGTTCTGCACAGACCCATTTTCGGCCAATATTTTGTTGCGCAATTCTGG 146021 ||| | ||||||| ||||| || || | ||| | || | ||| | || | Sbjct 73152 TATACTGGCAATGTTTTGCACGGAACCTCCGTTGGCAATGATCTCGTTTTTGAGGTC-GT 73094 Query 146022 AGTGTAAATGTTCAAG-TCTACGAGGGCCTTGATGAGATACTGGTTGACCACCTGAAACT 146080 || | || | || || ||| | || |||| ||||||||||||||||||| Sbjct 73093 CGTTCCACAGTCCCAGATCGCACAGGTCTCGAATCAGATGATGGTTGACCACCTGAAACT 73034 Query 146081 CGCCGGCGAGAACGCGCCTCAGATACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGT 146140 | || | || || | || || | ||| || || | || |||| ||| ||||||| Sbjct 73033 CTCCAGACAGGACCCTTCTGGTGTAAATGTTACTAGTATAAGGTTCGATCGATTCGTTGT 72974 Query 146141 TACCGAGTATCTGCGCCGTCGTAGCGGTAGGCAT 146174 |||| | | || ||||| || || || ||||| Sbjct 72973 TACCCAAGAGTTGTGCCGTTGTCGCTGTGGGCAT 72940 >seq9175 Length=65522 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| |||| ||||| || ||||| | || || ||||| ||||| ||||| ||| Sbjct 22653 TCCACCACGTAGACGCAATACTAAATGGAGTGTGGATTCTTTCTGAATGTTGTAGTCGGA 22712 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || || | | ||| || || ||||||||||| ||||||||| ||| || || || || Sbjct 22713 CAGTGTTCTACCATCTTCAAGTTGTTTTCCAGCAAAGATCAATCTCTGTTGGTCTGGTGG 22772 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || ||||| |||||| |||||| |||| | ||| | || || | || || Sbjct 22773 AATTCCCTCTTTGTCCTGGATTTTAGCTTTGACATTTTCAATTGTATCTGATGGTTCAAC 22832 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | || | || || || |||| |||||| ||||| || ||||| Sbjct 22833 TTCTAGAGTGATGGTCTTACCAGTCAAAGTTTTGACAAAGATTTGCAT 22880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475057555985520