Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Modiolus_20philippinarum_20[genbank_20GCA_5F002080025.1_202017-04- 05] 74,573 sequences; 2,629,556,424 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq35982 116 3e-21 seq11254 87.8 2e-12 >seq35982 Length=112201 Score = 116 bits (128), Expect = 3e-21 Identities = 157/217 (72%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA- 45184 ||||| || | ||| ||||| || || || ||||| |||||||| ||| | | || Sbjct 105090 CTCAAGACCAAATGAAGCGTGGACTCTTTCTGGATGTTATAATCC--GACAATGTACGAC 105033 Query 45185 -ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTT 45243 ||| || |||||||| || || | || | |||||||| || || ||||| ||||||| Sbjct 105032 CATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGAGGAATACCTTCTT 104973 Query 45244 TATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAA 45303 ||||||||||||| ||| | ||| | ||||| || | || ||||| || || | Sbjct 104972 TATCTTGAATTTTAGCTTTTACGTTTTCGATAGTGTCAGATGGTTCCACTTCAAGTGTTA 104913 Query 45304 CCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || || || ||||| || ||||||||||| Sbjct 104912 TTGTTTTTCCAGTAAGTGTTTTGACGAAAATTTGCAT 104876 Score = 111 bits (122), Expect = 1e-19 Identities = 156/217 (72%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA- 45184 ||||| || | ||| || ||||| || || || || || || || |||| | | || Sbjct 104634 CTCAAGACCAAATGAAGTGTTGACTCTTTCTGAATGTTGTAGTC--TGACAATGTACGAC 104577 Query 45185 -ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTT 45243 ||| || |||||||| || || | || | |||||||| || || ||||| ||||||| Sbjct 104576 CATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGAGGAATACCTTCTT 104517 Query 45244 TATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAA 45303 ||||||| || || ||| | ||| | ||||| || | || ||||| ||||||| Sbjct 104516 TATCTTGGATCTTAGCTTTTACGTTTTCGATAGTGTCAGATGGTTCCACTTCCAGAGTAA 104457 Query 45304 CCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || || | |||||| |||||||||||||| Sbjct 104456 TTGTTTTTCCTGTCAAAGTTTTGACAAAAATTTGCAT 104420 Score = 107 bits (118), Expect = 2e-18 Identities = 155/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA- 45184 ||||| || | ||| || || || || || ||||| || ||||| |||| | | || Sbjct 105318 CTCAAGACCAAATGAAGTGTCGACTCTTTCTGGATGTTGTAATC--TGACAATGTACGAC 105261 Query 45185 -ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTT 45243 ||| || |||||||| || || | || | |||||||| || || ||||| ||||||| Sbjct 105260 CATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGAGGAATACCTTCTT 105201 Query 45244 TATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAA 45303 ||||||| || || ||| | ||| | ||||| || | || ||||| || || | Sbjct 105200 TATCTTGGATCTTAGCTTTTACGTTTTCGATAGTGTCTGATGGTTCCACTTCAAGTGTTA 105141 Query 45304 CCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| ||||| || ||||| || ||||||||||| Sbjct 105140 TTGTTTTTCCGGTAAGTGTTTTGACGAAAATTTGCAT 105104 Score = 96.9 bits (106), Expect = 3e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 45185 ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTT 45244 ||| || |||||||| || || | || | |||||||| || || ||||| |||||||| Sbjct 105487 ATCTTCTAATTGTTTCCCAGCAAAGATAAGACGTTGCTGATCTGGAGGAATACCTTCTTT 105428 Query 45245 ATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 |||||||||||| ||| | ||| | ||||| || | || ||||| || || | Sbjct 105427 ATCTTGAATTTTAGCTTTTACGTTTTCGATAGTGTCAGATGGTTCCACTTCAAGTGTTAT 105368 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || || || ||||| || ||||||||||| Sbjct 105367 TGTTTTTCCTGTAAGTGTTTTGACGAAAATTTGCAT 105332 Score = 93.3 bits (102), Expect = 4e-14 Identities = 152/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA- 45184 ||||| || | ||| || || || || || ||||| || || || ||| | | || Sbjct 104862 CTCAAGACCAAATGAAGTGTGGACTCTTTCTGGATGTTGTAGTCC--GACAATGTACGAC 104805 Query 45185 -ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTT 45243 ||| || |||||||| || || | || | |||||||| || || ||||| ||||||| Sbjct 104804 CATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGAGGAATACCTTCTT 104745 Query 45244 TATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAA 45303 ||||||| || || ||| | ||| | ||||| || | || ||||| || || | Sbjct 104744 TATCTTGGATCTTGGCTTTTACGTTTTCGATAGTGTCTGATGGTTCCACTTCAAGTGTTA 104685 Query 45304 CCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || || || ||||| || ||||||||||| Sbjct 104684 TTGTTTTTCCAGTAAGTGTTTTGACGAAAATTTGCAT 104648 Score = 91.5 bits (100), Expect = 1e-13 Identities = 116/157 (74%), Gaps = 6/157 (4%) Strand=Plus/Minus Query 45104 TTATTTTATT--CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATA 45161 |||||| ||| ||||| | | | |||||||| ||| || ||||| || || ||||| Sbjct 105916 TTATTTCATTGTCCTCCTCTCAAACGCAACACTAAATGAAGGGTTGACTCTTTCTGGATG 105857 Query 45162 TTATAATCGCTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTT 45219 || || || |||| | | || ||| || |||||||| || || | || | |||| Sbjct 105856 TTGTAGTC--TGACAATGTACGACCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTT 105799 Query 45220 GCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTT 45256 |||| || || ||||| |||||||||||||||||||| Sbjct 105798 GCTGATCTGGAGGAATACCTTCTTTATCTTGAATTTT 105762 >seq11254 Length=169933 Score = 87.8 bits (96), Expect = 2e-12 Identities = 285/436 (65%), Gaps = 10/436 (2%) Strand=Plus/Minus Query 138105 TCaaaaaaaTTAGTTTTACCCTCCATGGATATGTTAGTCATAAAATTAAAAGGATTACTC 138164 |||||||| || ||||| || |||| ||| ||||| ||| |||||||| ||||| | Sbjct 70931 TCAAAAAAGTTGGTTTTGCCTTCCAGGGAGATGTTCTCCATGAAATTAAACGGATTTGAC 70872 Query 138165 GCCATAAAATGCTTTGGCTGATTAAGATCGACAAGCAAACGATCGGCTACAAATTCAATG 138224 | | | | ||| | ||| | ||| |||| | |||||||||||||||||| Sbjct 70871 GAATTGTACAGTTTTTCATAATTCAAATCTGTCAGCAGTCTGTCGGCTACAAATTCAATG 70812 Query 138225 TATCGACACATCGATTCGGTGTTCATGCCCAACAAACTGCAAGGCAACGCCGTTTTAAAA 138284 || | |||||| | ||||||| || | || || || ||||| | ||| Sbjct 70811 TACTGCCACATCATGGTGTTGTTCATTCCAATCAGTTTGACGGGTAACGCTTCCGTCAAA 70752 Query 138285 AATTCCTTTTCAATTTCTACCGCTTCGATAAACATGTCCAATATTCG-TTCGGACGACAG 138343 || || | ||| || || || || | || || || | ||| | ||| | Sbjct 70751 AACTCTTGTTCTATCAAAACGGCATCCGACACGATCTCGTGTACCCTATTCTG-CGAGGG 70693 Query 138344 TTTGTCGTGTTCGGGAATGTACTCATTGTAATACAAGCACGCAAAGTTGGT-GTGTAAAC 138402 ||| | | || || | || ||| || | ||| ||||| ||| | |||||||| Sbjct 70692 TTTATGCT--TCAGG----TGGTCGTTGAAAAGTAGGCAGGCAAA-TTGATAGTGTAAAC 70640 Query 138403 CTTCGTCGCGAGAGATAAGTTCGTTGCTAAACGTCAGCCCCGGCATGACGCCTTTGGTCT 138462 |||| || | | ||| || |||||||| ||||| | |||||||||| ||| ||| Sbjct 70639 CTTCATCCCTACTGATTAGCTCGTTGCTGAACGTTAAACCCGGCATGAGACCTCGTTTCT 70580 Query 138463 TGATGTAAAAGATGGCCGCGAAACTGCCCGaaaaaaaaaCGCCTTCGACAATAGCGAAAG 138522 | | |||| || || || ||||| || ||||| || | |||||| || | || || | Sbjct 70579 TTAACCAAAAAATTGCAGCAAAACTACCAGAAAAGAAGATGCCTTCTACCACGGCAAATG 70520 Query 138523 CCACCATGCGCACGGC 138538 | | || |||||||| Sbjct 70519 CTAGCAGTCGCACGGC 70504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451581859567080