Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Modiolus_20philippinarum_20[genbank_20GCA_5F002080025.1_202017-04- 05] 74,573 sequences; 2,629,556,424 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq35982 114 3e-20 seq9175 96.9 8e-15 seq39591 87.8 4e-12 >seq35982 Length=112201 Score = 114 bits (126), Expect = 3e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||| | ||| | || || || ||||| || |||| ||||||||| | ||| || | || Sbjct 104407 TCTTAAGACCAAATGAAGTGTTGACTCTTTCTGGATGTTGTAGTCTGACAATGTACGACC 104348 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 |||||| | || || || || ||||| ||||| ||||| || ||| |||||| ||| Sbjct 104347 ATCTTCTAATTGTTTGCCAGCAAAGATAAGACGTTGCTGATCTGGAGGAATTCCCTCTTT 104288 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 ||||| || || ||| || ||||| ||||||| | |||||| || | ||||| Sbjct 104287 ATCCTGGATTTTGGCCTTTACATTTTCGATAGTGTCTGAAGGTTCTACTTCAAGGGTGAT 104228 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || ||||||||||| || || Sbjct 104227 AGTTTTCCCTGTCAGTGTTTTCACAAATATCTG 104195 Score = 114 bits (126), Expect = 3e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||||| ||| | || || || ||||| || || | ||||||||| | ||| || | || Sbjct 104635 TCTCAAGACCAAATGAAGTGTTGACTCTTTCTGAATGTTGTAGTCTGACAATGTACGACC 104576 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 |||||| | || || || || ||||| ||||| ||||| || ||| ||| |||||| Sbjct 104575 ATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGAGGAATACCTTCTTT 104516 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 || || ||||| || ||| ||||| ||||| | || ||| || |||| || || Sbjct 104515 ATCTTGGATCTTAGCTTTTACGTTTTCGATAGTGTCAGATGGTTCCACTTCCAGAGTAAT 104456 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || | |||||| ||||||||||| Sbjct 104455 TGTTTTTCCTGTCAAAGTTTTGACAAAAATTTG 104423 >seq9175 Length=65522 Score = 96.9 bits (106), Expect = 8e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || ||||| ||||| || || || || || | ||||||||||| | || || |||||| Sbjct 23125 AGTACAAGATGGAGTGTTGATTCTTTCTGAATGTTGTAGTCAGATAGTGTTCTACCATCT 23184 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || || ||||| || ||||| | | ||| ||||| || |||||| ||| ||| Sbjct 23185 TCAAGTTGTTTTCCAGCAAAGATCAATCTCTGTTGGTCTGGTGGAATTCCCTCTTTGTCC 23244 Query 199538 TGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 || || ||| || || || || | || |||| || ||| || || | ||||| || Sbjct 23245 TGGAT-TTTAGCTTTGACATTCTCAATTGTATCTGATGGTTCAACTTCTAGAGTGATGGT 23303 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || | |||||| || || ||||| Sbjct 23304 CTTGCCAGTCAAAGTTTTGACGAAGATTTG 23333 >seq39591 Length=213653 Score = 87.8 bits (96), Expect = 4e-12 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 200930 AAAAACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACG 200989 ||| | | ||||| || || || |||||||| ||||||||||| ||| ||||||| ||| Sbjct 29099 AAAGATTGATCTTTGCTGGTAAACAGTTGGAGGATGGAAGGACATTGTCCGATTATAACA 29158 Query 200990 TCCAGAAAGAGTCTACTCTTCACCTTGT 201017 |||||||||| ||||| ||||| || || Sbjct 29159 TCCAGAAAGAATCTACCCTTCATCTCGT 29186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177795179831391