Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Modiolus_20philippinarum_20[genbank_20GCA_5F002080025.1_202017-04- 05] 74,573 sequences; 2,629,556,424 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq11254 161 1e-34 seq45074 95.1 1e-14 seq35982 89.7 5e-13 seq9175 87.8 2e-12 >seq11254 Length=169933 Score = 161 bits (178), Expect = 1e-34 Identities = 564/868 (65%), Gaps = 32/868 (4%) Strand=Plus/Minus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 |||||| || | |||||||||| || ||| | || |||||||| || ||||| || || Sbjct 70968 CATCACCCCCATCTTTTGATATTGACCGACCCTCTTTTCAAAAAAGTTGGTTTTGCCTTC 70909 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGA- 132709 || ||| ||| | ||| |||| || || || | | ||||| | || | | | Sbjct 70908 CAGGGAGATGTTCTCCATGAAATTAAACGGATTTGACGAATTGTACAGTTT--TTCATAA 70851 Query 132710 -TCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACAT---GGTTTCG 132765 ||| || ||||| |||||||| || || || ||||| ||| |||| ||| | | Sbjct 70850 TTCAAATCTGTCAGCAGTCTGTCGGCTACAAATTCAATGTACTGCCACATCATGGTGTTG 70791 Query 132766 CAATTAAGTCCCAGCAGACGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCG 132825 || | ||| | ||| || || | |||||| || | ||| ||| || || Sbjct 70790 ---TTCATTCCAATCAGTTTGACGGGTAACGCTTCCGTCAAAAACTCTTGTTCTATCAAA 70734 Query 132826 ACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCCGT-TGCACCAAATGCT- 132883 || || || | ||||| || || | | || || | ||| || || | Sbjct 70733 ACGGCATCCGACACGATCTCGTGTACCCTATTCT-GCGAGGGTTTATGCTTCAGGTGGTC 70675 Query 132884 --TGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTT 132941 |||| | | ||| ||||| | | || || || || ||||| || || ||||| Sbjct 70674 GTTGAAAAGTAGGCAGGCAAATTGATAGTGTAAACCTTCATCCCTACTGATTAGCTCGTT 70615 Query 132942 GCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACT 133001 |||||| || || || |||||||| || ||||| || | |||||| || || || ||||| Sbjct 70614 GCTGAACGTTAAACCCGGCATGAGACCTCGTTTCTTTAACCAAAAAATTGCAGCAAAACT 70555 Query 133002 GCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGC 133061 || |||||||||| ||| || || | || || || | ||| ||| || | || | | Sbjct 70554 ACCAGAAAAGAAGATGCCTTCTACCACGGCAAATGCTAGCAGTCGCACGGCAAAATTAGA 70495 Query 133062 TTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGT 133121 || | ||||| | ||||||| |||||| | | ||||| || || || Sbjct 70494 ATCAGAATCGTGTATCCAATTTATGGCCCATTTGGCCTTCTTCTGAACGCAAGGTATGGT 70435 Query 133122 TTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGCACGTAG--GTGTCGATG 133179 ||| || ||||| | ||| || ||| | | |||| | || || || || Sbjct 70434 TTCTATTGCGTTTAGCAACTGGTCTTTACGTAC--AGGATCTTTAATAAAAGTATCTATC 70377 Query 133180 AGGGTCGAA---TACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAG 133236 | || | |||||||| ||||||| ||| |||||||| || ||||| |||||||| Sbjct 70376 A---TCAAGCTGTACATTTCAGAGTGTATGTTTTCCATGGCAATCTGAAATCCGTAAAAA 70320 Query 133237 CACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACG 133296 | || || | ||| ||||| | | || | || | || |||||||| ||| Sbjct 70319 GATTTGGCTTCTGGAAACTGGACTTCATTACAAAACCTCTGTGCTAGGTTTTCGTTAACG 70260 Query 133297 ATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCG 133356 ||||||||||| || || || || ||||| | | | ||||| | ||| || || ||| Sbjct 70259 ATGCCGTCGCTTGCAGCAAAGAAAGCCAGAATGGACGAAATGAACTTGCGTTCTTTTTCG 70200 Query 133357 TTCAA---GCGCTCCCAGTC--GCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCC 133411 ||||| | || ||| || | | | | || |||| ||| ||||| || || |||| Sbjct 70199 TTCAATTTGTTCTGCCAATCTTGAACATCTACT--GACAAGTCAACCTCTTCTACAGTCC 70142 Query 133412 AAAACGACGCCTCGGCTTTTTTGTACAT 133439 || |||| ||| ||| | |||||||| Sbjct 70141 AATACGAAGCCAGGGCCTGCTTGTACAT 70114 >seq45074 Length=316632 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/224 (70%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 |||| ||||| || ||||| || ||||| || | || ||||| | || || |||| Sbjct 222980 CCTCATCCCTACTGATAAGTTCATTACTGAAGGTAAGACCAGGCATAATTCCTCGCTTTT 223039 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 ||||||||||||| || || ||||| || || || || | || || || || || || | Sbjct 223040 TGAGCCAAAATATAGCTGCAAAACTACCAGAGAAAAATATCCCTTCAACTGCTGCAAATG 223099 Query 133037 CCACCAGGCGCTC-GCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCG 133095 |||| | | ||| || || || || ||| | ||||| ||| ||||| || Sbjct 223100 CCACAACTCTCTCTGCATAAGCTGCATTTTTTTC-ATTTATCCATTTCAGAGCCCAATCT 223158 Query 133096 GCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAA 133139 || || ||||| || || ||||| ||||| ||||| || ||||| Sbjct 223159 GCTTTCTCTTTTACACATGGCATTGTTTCAATGGCATTGAACAA 223202 >seq35982 Length=112201 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| ||||| || ||||| || || || ||||| |||||| | || || || | | Sbjct 104192 ATGCAGATATTTGTGAAAACACTGACAGGGAAAACTATCACCCTTGAAGTAGAACCTTCA 104251 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | ||| | || | ||||||| || |||||||||||||| | || || Sbjct 104252 GACACTATCGAAAATGTAAAGGCCAAAATCCAGGATAAAGAGGGAATTCCTCCAGATCAG 104311 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || || || | || |||||||| | || || | || || | ||||||||| Sbjct 104312 CAACGTCTTATCTTTGCTGGCAAACAATTAGAAGATGGTCGTACATTGTCAGACTACAAC 104371 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| || || | || || |||||||| | | |||||||| || Sbjct 104372 ATCCAGAAAGAGTCAACACTTCATTTGGTCTTAAGATTGAGAGGAGG 104418 >seq9175 Length=65522 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || ||||| | || || || |||||||| | || || || | | Sbjct 22880 ATGCAAATCTTTGTCAAAACTTTGACTGGTAAGACCATCACTCTAGAAGTTGAACCATCA 22821 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | ||| | |||| ||||||| ||||||||||||||||| | |||||| Sbjct 22820 GATACAATTGAAAATGTCAAAGCTAAAATCCAGGACAAAGAGGGAATTCCACCAGACCAA 22761 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| | | || | || || ||||| || || || | | || || |||||||||| Sbjct 22760 CAGAGATTGATCTTTGCTGGAAAACAACTTGAAGATGGTAGAACACTGTCCGACTACAAC 22701 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 || || || ||| | || || ||||| || ||||| Sbjct 22700 ATTCAGAAAGAATCCACACTCCATTTAGTATTGCGT 22665 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| ||||| | || ||||| |||||||| | || || || | | Sbjct 23336 ATGCAAATCTTCGTCAAAACTTTGACTGGCAAGACCATCACTCTAGAAGTTGAACCATCA 23277 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | |||| ||||||| ||||||||||||||||| | |||||| Sbjct 23276 GATACAATTGAGAATGTCAAAGCTAAAATCCAGGACAAAGAGGGAATTCCACCAGACCAA 23217 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| | | || | || || ||||| || || || | | || || ||||||||| Sbjct 23216 CAGAGATTGATCTTTGCTGGAAAACAACTTGAAGATGGTAGAACACTATCTGACTACAAC 23157 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || || || ||| | || || ||| | || || ||| | |||| || Sbjct 23156 ATTCAGAAAGAATCAACACTCCATCTTGTACTCCGTCTCCGAGGAGG 23110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499706557672320