Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Modiolus_20philippinarum_20[genbank_20GCA_5F002080025.1_202017-04- 05] 74,573 sequences; 2,629,556,424 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq35982 163 6e-35 seq9175 152 1e-31 seq63802 84.2 5e-11 >seq35982 Length=112201 Score = 163 bits (180), Expect = 6e-35 Identities = 170/223 (76%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | |||||| || | ||||| || |||||||| ||||| ||||| || | | || Sbjct 104641 TCTCAATCTCAAGACCAAATGAAGTGTTGACTCTTTCTGAATGTTGTAGTCTGACAATGT 104582 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||||| | || ||||| || |||||||| ||||| || ||||||||||| || Sbjct 104581 ACGACCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGAGGAATACC 104522 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 |||||| ||||| || || || ||||| || || ||||| || ||||||||| || Sbjct 104521 TTCTTTATCTTGGATCTTAGCTTTTACGTTTTCGATAGTGTCAGATGGTTCCACTTCCAG 104462 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 |||| || ||||||||||||||||| || || | ||||||| Sbjct 104461 AGTAATTGTTTTTCCTGTCAAAGTTTTGACAAAAATTTGCATT 104419 Score = 158 bits (174), Expect = 3e-33 Identities = 168/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | |||||| || | ||||| ||||||||||| || || || ||||| | | || Sbjct 105097 TCTCAATCTCAAGACCAAATGAAGCGTGGACTCTTTCTGGATGTTATAATCCGACAATGT 105038 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||||| | || ||||| || |||||||| ||||| || ||||||||||| || Sbjct 105037 ACGACCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGAGGAATACC 104978 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 |||||| ||||||||||| || ||||| || || ||||| || |||||||||||| Sbjct 104977 TTCTTTATCTTGAATTTTAGCTTTTACGTTTTCGATAGTGTCAGATGGTTCCACTTCAAG 104918 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | || ||||| || | ||||| ||||| | |||||| Sbjct 104917 TGTTATTGTTTTTCCAGTAAGTGTTTTGACGAAAATTTGCAT 104876 Score = 149 bits (164), Expect = 1e-30 Identities = 166/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | |||||| || | ||||| ||||||||||| || || ||||| || | | || Sbjct 104869 TCTCAATCTCAAGACCAAATGAAGTGTGGACTCTTTCTGGATGTTGTAGTCCGACAATGT 104810 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||||| | || ||||| || |||||||| ||||| || ||||||||||| || Sbjct 104809 ACGACCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGAGGAATACC 104750 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 |||||| ||||| || || || ||||| || || ||||| || |||||||||||| Sbjct 104749 TTCTTTATCTTGGATCTTGGCTTTTACGTTTTCGATAGTGTCTGATGGTTCCACTTCAAG 104690 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | || ||||| || | ||||| ||||| | |||||| Sbjct 104689 TGTTATTGTTTTTCCAGTAAGTGTTTTGACGAAAATTTGCAT 104648 Score = 149 bits (164), Expect = 1e-30 Identities = 166/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | |||||| || | ||||| || |||||||| || || |||||||| | | || Sbjct 105325 TCTCAATCTCAAGACCAAATGAAGTGTCGACTCTTTCTGGATGTTGTAATCTGACAATGT 105266 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||||| | || ||||| || |||||||| ||||| || ||||||||||| || Sbjct 105265 ACGACCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGAGGAATACC 105206 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 |||||| ||||| || || || ||||| || || ||||| || |||||||||||| Sbjct 105205 TTCTTTATCTTGGATCTTAGCTTTTACGTTTTCGATAGTGTCTGATGGTTCCACTTCAAG 105146 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | || ||||| || | ||||| ||||| | |||||| Sbjct 105145 TGTTATTGTTTTTCCGGTAAGTGTTTTGACGAAAATTTGCAT 105104 Score = 131 bits (144), Expect = 4e-25 Identities = 162/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||| || || | ||||| || |||||||| || || ||||| || | | || Sbjct 104413 TCTCAATCTTAAGACCAAATGAAGTGTTGACTCTTTCTGGATGTTGTAGTCTGACAATGT 104354 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||||| | || || || || |||||||| ||||| || ||||||||||| || Sbjct 104353 ACGACCATCTTCTAATTGTTTGCCAGCAAAGATAAGACGTTGCTGATCTGGAGGAATTCC 104294 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||||| || || ||||| ||| || || || || ||||| ||| ||| |||||||| Sbjct 104293 CTCTTTATCCTGGATTTTGGCCTTTACATTTTCGATAGTGTCTGAAGGTTCTACTTCAAG 104234 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| | || || ||||||| ||||| || || | ||||| Sbjct 104233 GGTGATAGTTTTCCCTGTCAGTGTTTTCACAAATATCTGCAT 104192 Score = 127 bits (140), Expect = 5e-24 Identities = 123/158 (78%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| | || || || || |||||||| ||||| || ||||||||||| |||||| Sbjct 105489 CCATCTTCTAATTGTTTCCCAGCAAAGATAAGACGTTGCTGATCTGGAGGAATACCTTCT 105430 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || ||||||||||| || ||||| || || ||||| || |||||||||||| || Sbjct 105429 TTATCTTGAATTTTAGCTTTTACGTTTTCGATAGTGTCAGATGGTTCCACTTCAAGTGTT 105370 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || |||||||| | ||||| ||||| | |||||| Sbjct 105369 ATTGTTTTTCCTGTAAGTGTTTTGACGAAAATTTGCAT 105332 Score = 109 bits (120), Expect = 1e-18 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 ||||| || |||||||| || || ||||| || | | || | |||||||| | || Sbjct 105880 TGAAGGGTTGACTCTTTCTGGATGTTGTAGTCTGACAATGTACGACCATCTTCTAATTGT 105821 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 ||||| || |||||||| ||||| || ||||||||||| |||||||| ||||||||||| Sbjct 105820 TTACCAGCAAAGATAAGACGTTGCTGATCTGGAGGAATACCTTCTTTATCTTGAATTTTA 105761 Query 195058 TGCTTGACGTTCTCAATGGTGTC 195080 || ||||| || || ||||| Sbjct 105760 GCTTTTACGTTTTCGATAGTGTC 105738 >seq9175 Length=65522 Score = 152 bits (168), Expect = 1e-31 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || || || || ||||| ||||||||||| || | || ||||| |||||||| Sbjct 22900 ACAAGATGGAGTGTTGATTCTTTCTGAATATTGTAGTCAGATAGTGTTCTACCATCTTCA 22959 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || || || || || ||||| | || ||||||||||| ||||| || |||||||| || Sbjct 22960 AGTTGTTTTCCGGCAAAGATCAATCTCTGTTGGTCTGGTGGAATTCCCTCTTTGTCCTGG 23019 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 ||||| ||||| |||||||| || || || ||| ||||| || || | ||||| Sbjct 23020 ATTTTAGCTTTGACATTCTCAATTGTATCTGATGGTTCAACTTCTAGCGTGATGGTCTTG 23079 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| ||||| ||||| | |||||| Sbjct 23080 CCAGTCAATGTTTTGACGAAGATTTGCAT 23108 Score = 152 bits (168), Expect = 1e-31 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || || || || ||||| ||||| ||||| || | || ||||| |||||||| Sbjct 23128 ACAAGATGGAGTGTTGATTCTTTCTGAATGTTGTAGTCAGATAGTGTTCTACCATCTTCA 23187 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || || || || || ||||| | || ||||||||||| ||||| || |||||||| || Sbjct 23188 AGTTGTTTTCCAGCAAAGATCAATCTCTGTTGGTCTGGTGGAATTCCCTCTTTGTCCTGG 23247 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 ||||| ||||| |||||||| || || || ||| ||||| || || | ||||| Sbjct 23248 ATTTTAGCTTTGACATTCTCAATTGTATCTGATGGTTCAACTTCTAGAGTGATGGTCTTG 23307 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||||||||| ||||| | |||||| Sbjct 23308 CCAGTCAAAGTTTTGACGAAGATTTGCAT 23336 Score = 145 bits (160), Expect = 2e-29 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || || ||||| ||||| ||||| ||||| |||| || ||||| |||||||| || || Sbjct 22678 TGGAGTGTGGATTCTTTCTGAATGTTGTAGTCGGACAGTGTTCTACCATCTTCAAGTTGT 22737 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || || ||||| | || ||||||||||| ||||| || |||||||| || ||||| Sbjct 22738 TTTCCAGCAAAGATCAATCTCTGTTGGTCTGGTGGAATTCCCTCTTTGTCCTGGATTTTA 22797 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||||| || ||||| || || || ||| ||||| || || | ||||| || ||| Sbjct 22798 GCTTTGACATTTTCAATTGTATCTGATGGTTCAACTTCTAGAGTGATGGTCTTACCAGTC 22857 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 |||||||| || || | |||||| Sbjct 22858 AAAGTTTTGACAAAGATTTGCAT 22880 >seq63802 Length=43549 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 195037 CCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCA 195096 ||||| ||||||||||||||| |||||| || ||||||||||| || ||||| || Sbjct 12690 CCTTCCTTGTCTTGAATTTTTGCCTTGACATTTTCAATGGTGTCAGATGGCTCCACCTCT 12631 Query 195097 AGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||||| ||||| || ||||| || || || || | ||||| Sbjct 12630 AGGGTAATGGTCTTCCCCGTCAATGTCTTCACAAAGATCTGCAT 12587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1108421527429491