Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Modiolus_20philippinarum_20[genbank_20GCA_5F002080025.1_202017-04- 05] 74,573 sequences; 2,629,556,424 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq11254 242 4e-59 seq45074 163 3e-35 seq66969 127 2e-24 seq36930 84.2 2e-11 >seq11254 Length=169933 Score = 242 bits (268), Expect = 4e-59 Identities = 587/882 (67%), Gaps = 34/882 (4%) Strand=Plus/Minus Query 18656 TCATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCT 18715 |||| || ||||| |||||||||| | || || |||||||| || || ||||| || | Sbjct 70969 TCATCACCCCCATCTTTTGATATTGACCGACCCTCTTTTCAAAAAAGTTGGTTTTGCCTT 70910 Query 18716 CTAATGATATACATTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATC 18775 | | || || ||||| |||| ||| |||||| ||| || | ||||| | Sbjct 70909 CCAGGGAGATGTTCTCCATGAAATTAAACGGATTTGACGAATTGTACAGTTTTT-----C 70855 Query 18776 CTAATTCTAAT-----AGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATC 18830 |||||| ||| || ||||| || |||||||||| ||| || |||||| Sbjct 70854 ATAATTCAAATCTGTCAGCAGTCTGTCGGCTACAAATTCAATGTACTGCCACATCATGGT 70795 Query 18831 ACAATTCATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATT 18890 |||||||| || | ||| || |||| || || || | ||| ||||||||||| Sbjct 70794 GTTGTTCATTCCAATCAGTTTGACGGGTAACGCTTCCGTCAAAAACTCTTGTTCTATCAA 70735 Query 18891 TACTGCCTCTGATATAATAGATACAACTCTATCTTCATTAGGAGGGTATAGA----AGAT 18946 || || || || | || || |||| || | |||||| || || | Sbjct 70734 AACGGCATCCGACACGATCTCGTGTACCCTAT--TC--TGCGAGGGTTTATGCTTCAGGT 70679 Query 18947 GTT---TAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATT 19003 | | | || | | || ||||| | | | |||| || || || ||||| || | | Sbjct 70678 GGTCGTTGAAAAGTAGGCAGGCAAATTGATAGTGTAAACCTTCATCCCTACTGATTAGCT 70619 Query 19004 CATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAA 19063 | || || |||||||| ||||| || |||| ||| |||||||| || || | ||||| Sbjct 70618 CGTTGCTGAACGTTAAACCCGGCATGAGACCTCGTTTCTTTAACCAAAAAATTGCAGCAA 70559 Query 19064 ATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAAC 19123 | ||||||||||| || |||||||| | ||||| || | |||| | || || Sbjct 70558 AACTACCAGAAAAGAAGATGCCTTCTACCACGGCAAATGCTAGCAGTCGCACGGCAAAAT 70499 Query 19124 TAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCA 19183 ||| |||| || || ||||| || | ||||| | |||||||| | || || || | Sbjct 70498 TAGAATCAGAATCGTGTATCCAATTTATGGCCCATTTGGCCTTCTTCTGAACGCAAGGTA 70439 Query 19184 TTGTCTCTATAGAATTAAATA---GATACATACGCTCATCTGTATCTTTAACATATGCAT 19240 | || ||||| | || | | | | |||| || | |||||||| | | | || Sbjct 70438 TGGTTTCTATTGCGTTTAGCAACTGGTCTTTACGTACA---GGATCTTTAATAAAAGTAT 70382 Query 19241 CTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAA 19300 |||||| || ||||||||||| || || || ||||| || || |||||||||||||||| Sbjct 70381 CTATCATCAAGCTGTACATTTCAGAGTGTATGTTTTCCATGGCAATCTGAAATCCGTAAA 70322 Query 19301 AACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAA 19360 || || | ||||||| | ||| |||||| ||||||| || | | | ||||| |||| Sbjct 70321 AAGATTTGGCTTCTGGAAACTGGACTTCATTACAAAACCTCTGTGCTAGGTTTTCGTTAA 70262 Query 19361 CTATTCCATCACTAGCTGCAAAAAATGC--TAATACATGTTTAATAAAATGTTTTTCATC 19418 | || || || || || ||||| || || ||| | | ||| || | ||| | Sbjct 70261 CGATGCCGTCGCTTGCAGCAAAGAAAGCCAGAATGGACG--AAATGAACTTGCGTTCTTT 70204 Query 19419 TGAGGTTAATGTATT---CCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGT 19475 | | | ||| | || |||||| | || |||| || || || || ||||| || || Sbjct 70203 TTCGTTCAATTTGTTCTGCCAATCTTGAACATCTACTGACAAGTCAACCTCTTCTACAGT 70144 Query 19476 CCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATC 19517 |||| | |||||| || | || ||||| || ||||||| Sbjct 70143 CCAATACGAAGCCAGGGCCTGCTTGTACATCTTAAATATATC 70102 >seq45074 Length=316632 Score = 163 bits (180), Expect = 3e-35 Identities = 168/220 (76%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| || ||||| || | ||||||| || || | ||||||||| | ||||| |||| Sbjct 222980 CCTCATCCCTACTGATAAGTTCATTACTGAAGGTAAGACCAGGCATAATTCCTCGCTTTT 223039 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||| ||||||| ||||| ||||| || ||||| ||||| ||||||||||| | Sbjct 223040 TGAGCCAAAATATAGCTGCAAAACTACCAGAGAAAAATATCCCTTCAACTGCTGCAAATG 223099 Query 19103 CAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAG 19162 | || | ||| ||| ||||| |||| || | || ||||||||||| |||||||| | Sbjct 223100 CCACAACTCTCTCTGCATAAGCTGCATTTTTTTCATTTATCCATTTCAGAGCCCAATCTG 223159 Query 19163 CCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAA 19202 | |||| |||||||||||||||||| || || | ||| || Sbjct 223160 CTTTCTCTTTTACACATGGCATTGTTTCAATGGCATTGAA 223199 Score = 134 bits (148), Expect = 2e-26 Identities = 153/203 (75%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 19345 ACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATA 19404 |||| ||||||||| || |||||||||||||| ||||| ||||| || ||||| ||| Sbjct 225509 ACCAGATTTTCATTTACAATTCCATCACTAGCAGCAAAGAATGCCAAAACATGGGAAATG 225568 Query 19405 AAATGTTTTTCATCTGAGGTTAATGTATTCCAAT-CATTAATATCTTTAGATAAATCTAC 19463 |||||| | || || |||| || | ||| | || || |||||| || ||||| || Sbjct 225569 AAATGTCTCTCTTCATCCTTTAAAGTTTCCCAGTGCACCAA-ATCTTTTGACAAATCAAC 225627 Query 19464 TTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCACGATA 19523 |||||| | ||||||||||| || ||||| || || ||||| | ||| || || |||| Sbjct 225628 TTCTTCTGCAGTCCAAAAAGAGGCTTCTGCCTTCTTGTACATTTGCCAAATGTCGTGATA 225687 Query 19524 TTGTATAGGAAATATAACAAATC 19546 || || || || | |||||||| Sbjct 225688 CTGAATTGGGAAGACAACAAATC 225710 Score = 105 bits (116), Expect = 8e-18 Identities = 88/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 18657 CATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTC 18716 |||||| ||||| ||||||||||| ||||||| |||||||| || || |||||||| || Sbjct 220490 CATTACACCCATCTTTTGATATTCTCCAACTCTCTTTTCAAAAAAGTTCGTTTTTCCTTC 220549 Query 18717 TAATGATATACATTCCATAAAATCAAATGGATTTTTTACATTATATAt 18764 | ||| || |||||||||||||||||| |||| ||||| || || Sbjct 220550 CAGTGAAATCTGTTCCATAAAATCAAATGGGTTTTCCACATTGTAAAT 220597 Score = 104 bits (114), Expect = 3e-17 Identities = 143/194 (74%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 18795 ATCCGCTACAAATTTAATATA-TGTGTTCATCATATCACAATTCATTCCTATTAATTTAA 18853 ||| |||||||||| ||||| ||| ||||| | |||||||||||||| || || Sbjct 221307 ATCGGCTACAAATTCTATATACTGT-TTCATTAATGTGCAATTCATTCCTATCAAATTGC 221365 Query 18854 CAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGC--CTCTGATATAATAGA 18911 ||||| || |||||||| |||| ||||| || | |||||| || |||| || | | Sbjct 221366 ATGGTAGCGCTTCTGTAAGGAATTTCTGTTCAATTTCTACTGCATCTTTGAT-TATTTCA 221424 Query 18912 TACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAAAATC 18971 ||| ||||| |||| | | || | || |||||| || |||| ||||| ||||| || Sbjct 221425 TAC-ACTCTGTCTTGAGTTGGTTTCTTTACAAGATGATTGTACATTAAACAAGCAAAGTC 221483 Query 18972 ACAATGTAGTCCCT 18985 |||||| || |||| Sbjct 221484 ACAATGGAGACCCT 221497 >seq66969 Length=194959 Score = 127 bits (140), Expect = 2e-24 Identities = 108/133 (81%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 || ||||| ||||| | |||||| | | ||||||||||||||||||| | |||||||||| Sbjct 30637 TGGAATTCCCCAGACAATACTCTTCTGGTATATATATTACTTGTATAGGCTTCTATAGAT 30696 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 |||||||| || || ||||||||||| || ||||| ||||| | || | ||| | ||| Sbjct 30697 TCATTATTGCCTAAGATTTGAGCAGTAGAAGCTGTTGGCATTGGAGCTAATAACAGGCTG 30756 Query 47448 TTTCTTACTCCAT 47460 ||||| || |||| Sbjct 30757 TTTCTAACACCAT 30769 Score = 114 bits (126), Expect = 1e-20 Identities = 122/160 (76%), Gaps = 1/160 (1%) Strand=Plus/Plus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| |||| |||||||| || |||| ||| ||| | ||||| | |||||||||| Sbjct 26499 TCCAGGCATAAAAATGCATGCTTGTTAGTTTTCCGTAATTTGGTTCAGCTATATGAATAT 26558 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | ||||| |||||||||||||||||||| ||||| || || ||||| | | | | || Sbjct 26559 TCAGAGACTGACTCTGATCAATAAATGCTCCTCTGTCTGCAGCCATCTTAATTACAGTCC 26618 Query 47170 TTTGTGGTATCTCCCATACTGTTTTATA-AATTTGTTTAA 47208 | |||| |||||||| || ||||| || ||||| || || Sbjct 26619 TCTGTGAAATCTCCCACACAGTTTTGTACAATTTCTTCAA 26658 Score = 105 bits (116), Expect = 8e-18 Identities = 172/245 (70%), Gaps = 2/245 (1%) Strand=Plus/Plus Query 48108 TATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCA 48167 || || ||||| || || ||||| || ||||| | || | ||| |||||||||||| Sbjct 45353 TACTTTGTATACAAATTTTCAAACTCTTCCCCCCAACAATCTTGTAAACCAGGACATTCA 45412 Query 48168 TTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGT 48227 | |||||||||| | ||| || ||| ||| ||| | ||||||| | ||||| Sbjct 45413 TGTGGACACATCAGAGTCCACTCTCCATTGCTTTCTACACGCTTCATAAACAAGTCTGGA 45472 Query 48228 ATCCAAAGAGCTATA-AATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTT 48286 ||||| | || ||| |||| |||||||| ||| ||||| || || | ||| | || Sbjct 45473 ATCCACATGGC-ATAGAATAGATCCCTAGCTCTGTTCTCTTCTTTTCCTGTGTTCTTCTT 45531 Query 48287 AAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACC 48346 | ||||| || || | ||||||||||||||| || || | || || || | | || Sbjct 45532 ACAATCAAGGAAATCAAATATATCAGCATGCCAAGGCTCCAGGTACATAGCAAAAGCTCC 45591 Query 48347 TGGTC 48351 ||||| Sbjct 45592 TGGTC 45596 >seq36930 Length=140287 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 136691 AAAAAGTTTCCAAATGGAATATTTGCAGAAATAAAATATGACGGAGAACGTGTACAGGTT 136750 || || | |||||||||||| | ||||||||||||||||||||||||| | || |||||| Sbjct 79478 AAGAAATGTCCAAATGGAATGTATGCAGAAATAAAATATGACGGAGAAAGAGTTCAGGTT 79537 Query 136751 CACAAGAATGGAAACCACTTTGCATTTTTTAGTAGAAACATGAAACCCGTA 136801 || || || ||| | | || || |||||| | | ||||||| ||| Sbjct 79538 CATAAAAAGGGAGATAAATTCCAATACTTTAGTCGTAGTTTGAAACCTGTA 79588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561584823255720