Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Modiolus_20philippinarum_20[genbank_20GCA_5F002080025.1_202017-04- 05] 74,573 sequences; 2,629,556,424 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq11254 284 1e-71 seq36930 116 4e-21 seq45074 114 2e-20 >seq11254 Length=169933 Score = 284 bits (314), Expect = 1e-71 Identities = 621/920 (68%), Gaps = 24/920 (3%) Strand=Plus/Minus Query 36823 TTTTTTAAAAATCTTCATCTAACGTAAATTTTATTTCCTTATTACTATTCATAACTCCCA 36882 |||||||||| |||||||||| ||||||| || | ||| || | ||| || |||| Sbjct 71011 TTTTTTAAAATTCTTCATCTATCGTAAATGTTCGTG---TAT--CTGT-CATCACCCCCA 70958 Query 36883 TTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGTGATATAT 36942 | |||||||||| || || | |||| ||||| || || || ||||| || || || | Sbjct 70957 TCTTTTGATATTGACCGACCCTCTTTTCAAAAAAGTTGGTTTTGCCTTCCAGGGAGATGT 70898 Query 36943 TTTCCATAAAATCAAATGGATTAGATGTATTATATATAGTACTACATGAT--AATTCCTT 37000 | ||||| |||| ||| ||||| || | ||| || | || | ||| || || || | Sbjct 70897 TCTCCATGAAATTAAACGGATTTGACGAATTGTACA--GTTTTTCATAATTCAAATCTGT 70840 Query 37001 CAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTTATACCAAT 37060 ||| || || || || |||||||| ||||| | ||||| | | ||| || ||||| Sbjct 70839 CAGCAGTCTGTCGGCTACAAATTCAATGTACTGCCACATCATGGTGTTGTTCATTCCAAT 70780 Query 37061 TAGTTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACAGCATCTTTAAC 37120 ||||| || || | || || | ||| || |||||| | || ||||| || Sbjct 70779 CAGTTTGACGGGTAACGCTTCCGTCAAAAACTCTTGTTCTATCAAAACGGCATCCGACAC 70720 Query 37121 TATATTAACAATAACTTCTTCAGTTGGGGGATATTTTAAATAT-----TTAAACAATAAA 37175 || | || | | ||| | ||| ||| | | | || || | || Sbjct 70719 GATCTCGTG--TACCCTATTCTGCGAGGGTTTATGCTTCAGGTGGTCGTTGAAAAGTAGG 70662 Query 37176 CATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAAT 37235 || ||||| | | | |||||||||||||| ||||| || | || || || ||||| Sbjct 70661 CAGGCAAATTGATAGTGTAAACCTTCATCCCTACTGATTAGCTCGTTGCTGAACGTTAAA 70602 Query 37236 CCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAA 37295 || ||||| | ||||| ||| || | |||||| ||||| |||||| ||||||||||| Sbjct 70601 CCCGGCATGAGACCTCGTTTCTTTAACCAAAAAATTGCAGCAAAACTACCAGAAAAGAAG 70542 Query 37296 ATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAGAA 37355 || ||||| || | |||||||||| || || | ||| | ||| | |||| Sbjct 70541 ATGCCTTCTACCACGGCAAATGCTAGCAGTCGCACGGCAAAATTAGAATCAGAATCGTGT 70482 Query 37356 ATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTTT 37415 ||||| ||| | | ||| | ||||| | ||| || || ||||| ||||| ||| Sbjct 70481 ATCCAATTTATGGCCCATTTGGCCTTCTTCTGAACGCAAGGTATGGTTTCTATTGCGTTT 70422 Query 37416 AAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACATT 37475 | | || ||| | || |||| | ||| ||||||| || | || || |||||| Sbjct 70421 AGCAACTGGTCTTTACGTACAGGATCTTTAATAAAAGTATCTATCATCAAGCTGTACATT 70362 Query 37476 TCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAAT 37535 |||||||| || ||||| || || |||||||| || |||||| | | ||||| | || Sbjct 70361 TCAGAGTGTATGTTTTCCATGGCAATCTGAAATCCGTAAAAAGATTTGGCTTCTGGAAAC 70302 Query 37536 TGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCA 37595 || || || ||| ||||||||| |||| |||||| ||||| || || || || || ||| Sbjct 70301 TGGACTTCATTACAAAACCTCTGTGCTAGGTTTTCGTTAACGATGCCGTCGCTTGCAGCA 70242 Query 37596 AAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGAT-AATTTTTT---CCA 37651 |||||||| |||| | || || | | ||| | || | | ||||| || ||| Sbjct 70241 AAGAAAGCCAGAATGGACGAAATGAACTTGCGTTC-TTTTTCGTTCAATTTGTTCTGCCA 70183 Query 37652 ATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAACTTGCCAATGCACG 37711 ||| | || |||| ||| || ||||| || || || |||||| | |||| || | Sbjct 70182 ATCTTGAACATCTACTGACAAGTCAACCTCTTCTACAGTCCAATACGAAGCCAGGGCCTG 70123 Query 37712 TTTATACATCGTCCAAATAT 37731 || |||||| | |||||| Sbjct 70122 CTTGTACATCTT--AAATAT 70105 >seq36930 Length=140287 Score = 116 bits (128), Expect = 4e-21 Identities = 244/357 (68%), Gaps = 10/357 (3%) Strand=Plus/Plus Query 142541 GGAGGGATAATGTCTATATTTCTTATGGGTTGTTATGATGAAGATACAAATACATGGAAA 142600 || || || |||||||||||| | |||||| ||||| ||||||| | | Sbjct 114576 GGTGGAATTATGTCTATATTTTTGTTGGGTTCATATGACCCTCATACAAAGAAGTTCTGT 114635 Query 142601 ACTGTTACAAAATGTT-CAG--GATTCAATGATGAAACATTAAAGGAATTACAGTCA--A 142655 || || || |||||| ||| | || |||| | | |||| ||||| | ||| || | Sbjct 114636 ACAGTAACTAAATGTGGCAGTGGGTTTGATGACAAGAGATTAGAGGAACTTCAGACAGAA 114695 Query 142656 TT-GATATGATAAAAATCAGTAAAAATAAAGATAAAATACCAACATGGTTAAATATTAAC 142714 || ||| | ||||||| |||||| || || |||| |||| | ||| | ||| | ||| Sbjct 114696 TTAGATGTTGTAAAAATAAGTAAAGATCAATCTAAAGTACCCAGCTGGCTGAATGTGAAC 114755 Query 142715 AGTATACATTA--TCCAGATTTTATTGTTAATAATCCAAAAACATCACCTGTTTGGGAAA 142772 | | || ||| |||||| ||| |||| || |||| || ||||| || || ||||||| Sbjct 114756 A--AGACTTTAGTTCCAGACTTTGTTGTGAAAGATCCCAAGACATCTCCAGTGTGGGAAA 114813 Query 142773 TATCCGGATATGAATTTACAAAATCACCATCTCATACAGCAGATGGGATATCTATTAGAT 142832 || ||| || |||| | || || |||||||| |||||||||||||| |||| Sbjct 114814 TAATGGGAGCAGAGTTTAGTCATTCCAGTTCACATACAGCTGATGGGATATCTATAAGAT 114873 Query 142833 TTCCTAGATGTAAAAATATAAGAAATGATAAAGATTGGTTATCTGCAACAAATTTAC 142889 |||| | | || | ||| | |||||| ||| | |||||||||| ||| Sbjct 114874 TTCCACGTATTGCTAAAGTTAGAGACGATAAAACATGGGAAAATGCAACAAATGTAC 114930 >seq45074 Length=316632 Score = 114 bits (126), Expect = 2e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259 ||||| ||||| || | ||||||| ||||| | || ||||| | |||| ||||| Sbjct 222982 TCATCCCTACTGATAAGTTCATTACTGAAGGTAAGACCAGGCATAATTCCTCGCTTTTTG 223041 Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319 | ||||||||| ||||||||| ||||| || || || |||||||||||||||||||| Sbjct 223042 AGCCAAAATATAGCTGCAAAACTACCAGAGAAAAATATCCCTTCAACTGCTGCAAATGCC 223101 Query 37320 ACAAGACGTGTACCGAAAGTTGAACTATAATCAGAAATCCAtttttttGTCCAATCTGCC 37379 |||| | | ||| || | | | ||| |||||||| | ||||||||| Sbjct 223102 ACAACTCTCTCTGCATAAGCTGCATTTTTTTCATTTATCCATTTCAGAGCCCAATCTGCT 223161 Query 37380 TTTAATTTAACACATTCAATTGTTTCAATTGCTTTTAA 37417 || ||| |||||| ||||||||||| || || || Sbjct 223162 TTCTCTTTTACACATGGCATTGTTTCAATGGCATTGAA 223199 Score = 100 bits (110), Expect = 3e-16 Identities = 78/93 (84%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTC 36931 ||| || ||||| ||||||||||||||||||| |||| ||||| || || |||||||| Sbjct 220490 CATTACACCCATCTTTTGATATTCTCCAACTCTCTTTTCAAAAAAGTTCGTTTTTCCTTC 220549 Query 36932 TAGTGATATATTTTCCATAAAATCAAATGGATT 36964 ||||| || | |||||||||||||||||| || Sbjct 220550 CAGTGAAATCTGTTCCATAAAATCAAATGGGTT 220582 Score = 96.9 bits (106), Expect = 4e-15 Identities = 141/197 (72%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 37566 TTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGT 37625 |||||||| || || ||||||||||| |||||||| || | ||||| || |||||| Sbjct 225515 TTTTCATTTACAATTCCATCACTAGCAGCAAAGAATGCCAAAACATGGGAAATGAAATGT 225574 Query 37626 CTTTCATCATTTGATAATTTTTTCCAAT-CATTAATATCTTTTGATAAATCAACTTCATC 37684 || || |||| ||| ||| ||| | || || ||||||||| ||||||||||| || Sbjct 225575 CTCTCTTCATCCTTTAAAGTTTCCCAGTGCACCAA-ATCTTTTGACAAATCAACTTCTTC 225633 Query 37685 AACGGTCCAAAAACTTGCCAATGCACGTTTATACATCGTCCAAATATCATTATGTTGTAT 37744 | ||||||||| || ||| || ||||| |||||| || | || || || Sbjct 225634 TGCAGTCCAAAAAGAGGCTTCTGCCTTCTTGTACATTTGCCAAATGTCGTGATACTGAAT 225693 Query 37745 TGGAAATATTACAAATC 37761 ||| || | ||||||| Sbjct 225694 TGGGAAGACAACAAATC 225710 Score = 87.8 bits (96), Expect = 2e-12 Identities = 74/91 (81%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 37440 TCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCT 37499 ||| | || || || ||||| |||| ||| |||||||||||||| |||||||| || ||| Sbjct 224457 TCTTTAATGTAGGTGTCAATAAGTAGACTGTACATTTCAGAGTGGATATTTTCCATGGCT 224516 Query 37500 ATCTGAAAACCATAAAAACACCTAGCTTCAG 37530 || || || ||||| ||||| || ||||||| Sbjct 224517 ATTTGGAAGCCATAGAAACATCTTGCTTCAG 224547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 591764664490920