Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Modiolus_20philippinarum_20[genbank_20GCA_5F002080025.1_202017-04- 05] 74,573 sequences; 2,629,556,424 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq35982 161 8e-35 seq39591 89.7 4e-13 >seq35982 Length=112201 Score = 161 bits (178), Expect = 8e-35 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 |||||||| || | || || |||||||| || || ||||| || || ||||| || | Sbjct 104646 CCTCCTCTCAATCTCAAGACCAAATGAAGTGTTGACTCTTTCTGAATGTTGTAGTCTGAC 104587 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| || ||||| ||||| ||||| || | ||| || ||||| || ||| Sbjct 104586 AATGTACGACCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGAGGA 104527 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || |||||||||||||| || || |||||| |||| | ||||||||| | ||||||| Sbjct 104526 ATACCTTCTTTATCTTGGATCTTAGCTTTTACGTTTTCGATAGTGTCAGATGGTTCCACT 104467 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || ||||| | ||||| || || |||||||| ||||| || ||||| Sbjct 104466 TCCAGAGTAATTGTTTTTCCTGTCAAAGTTTTGACAAAAATTTGCAT 104420 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 |||||||| || | || || |||||||| || || ||||| || || || ||||| | Sbjct 105102 CCTCCTCTCAATCTCAAGACCAAATGAAGCGTGGACTCTTTCTGGATGTTATAATCCGAC 105043 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| || ||||| ||||| ||||| || | ||| || ||||| || ||| Sbjct 105042 AATGTACGACCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGAGGA 104983 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || |||||||||||||||||||| |||||| |||| | ||||||||| | ||||||| Sbjct 104982 ATACCTTCTTTATCTTGAATTTTAGCTTTTACGTTTTCGATAGTGTCAGATGGTTCCACT 104923 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| || | ||||| || || | ||||| || || || ||||| Sbjct 104922 TCAAGTGTTATTGTTTTTCCAGTAAGTGTTTTGACGAAAATTTGCAT 104876 Score = 156 bits (172), Expect = 3e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||||||||| || | ||| || |||||||| || || ||||| || || ||||| || | Sbjct 104420 TTCCTCCTCTCAATCTTAAGACCAAATGAAGTGTTGACTCTTTCTGGATGTTGTAGTCTG 104361 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | || | |||| || ||||| || || ||||| || | ||| || ||||| || | Sbjct 104360 ACAATGTACGACCATCTTCTAATTGTTTGCCAGCAAAGATAAGACGTTGCTGATCTGGAG 104301 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 |||| || |||||||| || ||||| |||||| |||| | |||||| || | ||| | Sbjct 104300 GAATTCCCTCTTTATCCTGGATTTTGGCCTTTACATTTTCGATAGTGTCTGAAGGTTCTA 104241 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||||| |||| ||||| || || | ||||| |||||||||||||| Sbjct 104240 CTTCAAGGGTGATAGTTTTCCCTGTCAGTGTTTTCACAAATATCTGCAT 104192 Score = 152 bits (168), Expect = 4e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 |||||||| || | || || |||||||| || || ||||| || || |||||||| | Sbjct 105330 CCTCCTCTCAATCTCAAGACCAAATGAAGTGTCGACTCTTTCTGGATGTTGTAATCTGAC 105271 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| || ||||| ||||| ||||| || | ||| || ||||| || ||| Sbjct 105270 AATGTACGACCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGAGGA 105211 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || |||||||||||||| || || |||||| |||| | |||||| || | ||||||| Sbjct 105210 ATACCTTCTTTATCTTGGATCTTAGCTTTTACGTTTTCGATAGTGTCTGATGGTTCCACT 105151 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| || | ||||| ||||| | ||||| || || || ||||| Sbjct 105150 TCAAGTGTTATTGTTTTTCCGGTAAGTGTTTTGACGAAAATTTGCAT 105104 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 |||||||| || | || || |||||||| || || ||||| || || ||||| || | Sbjct 104874 CCTCCTCTCAATCTCAAGACCAAATGAAGTGTGGACTCTTTCTGGATGTTGTAGTCCGAC 104815 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| || ||||| ||||| ||||| || | ||| || ||||| || ||| Sbjct 104814 AATGTACGACCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGAGGA 104755 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || |||||||||||||| || || |||||| |||| | |||||| || | ||||||| Sbjct 104754 ATACCTTCTTTATCTTGGATCTTGGCTTTTACGTTTTCGATAGTGTCTGATGGTTCCACT 104695 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| || | ||||| || || | ||||| || || || ||||| Sbjct 104694 TCAAGTGTTATTGTTTTTCCAGTAAGTGTTTTGACGAAAATTTGCAT 104648 Score = 138 bits (152), Expect = 9e-28 Identities = 135/173 (78%), Gaps = 1/173 (1%) Strand=Plus/Minus Query 101238 CATT-TCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAA 101296 |||| ||||||||| ||||| || |||||||||||||| || ||||| || || ||||| Sbjct 105910 CATTGTCCTCCTCTCAAACGCAACACTAAATGAAGGGTTGACTCTTTCTGGATGTTGTAG 105851 Query 101297 TCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCG 101356 || | | || | |||| || ||||| ||||| ||||| || | ||| || ||||| Sbjct 105850 TCTGACAATGTACGACCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGCTGATCT 105791 Query 101357 GGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTC 101409 || ||||| |||||||||||||||||||| |||||| |||| | |||||| Sbjct 105790 GGAGGAATACCTTCTTTATCTTGAATTTTAGCTTTTACGTTTTCGATAGTGTC 105738 Score = 125 bits (138), Expect = 6e-24 Identities = 122/157 (78%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 101313 CATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTT 101372 |||| || ||||| || || ||||| || | ||| || ||||| || ||||| ||||||| Sbjct 105488 CATCTTCTAATTGTTTCCCAGCAAAGATAAGACGTTGCTGATCTGGAGGAATACCTTCTT 105429 Query 101373 TATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGA 101432 ||||||||||||| |||||| |||| | ||||||||| | |||||||||||| || | Sbjct 105428 TATCTTGAATTTTAGCTTTTACGTTTTCGATAGTGTCAGATGGTTCCACTTCAAGTGTTA 105369 Query 101433 CCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| || || | ||||| || || || ||||| Sbjct 105368 TTGTTTTTCCTGTAAGTGTTTTGACGAAAATTTGCAT 105332 >seq39591 Length=213653 Score = 89.7 bits (98), Expect = 4e-13 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 101242 TCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGC 101301 ||||||||| || | | || | |||||||||||||||||| || || || ||||||| Sbjct 29205 TCCTCCTCTCAATCTGAGGACGAGATGAAGGGTAGATTCTTTCTGGATGTTATAATCGGA 29146 Query 101302 GATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGG 101361 | || || |||| ||||| || ||||| ||||| ||||| | || ||||| || || Sbjct 29145 CAATGTCCTTCCATCCTCCAACTGTTTACCAGCAAAGATCAATCTTTGCTGATCTGGGGG 29086 Query 101362 AATGCCT 101368 ||| ||| Sbjct 29085 AATACCT 29079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395918239032561