Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Modiolus_20philippinarum_20[genbank_20GCA_5F002080025.1_202017-04- 05] 74,573 sequences; 2,629,556,424 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq35982 105 5e-18 seq9175 86.0 5e-12 >seq35982 Length=112201 Score = 105 bits (116), Expect = 5e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 ||| |||||||| || || |||||| ||||| ||||| || || | | ||| | || Sbjct 104632 CAAGACCAAATGAAGTGTTGACTCTTTCTGAATGTTGTAGTCTGACAATGTACGACCATC 104573 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 || || || ||||| ||||| || || || || ||||| | |||| || || || || Sbjct 104572 TTCTAATTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGAGGAATACCTTCTTTATC 104513 Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733 ||||| |||||| | | || || || | ||||| |||| ||||| || Sbjct 104512 TTGGATCTTAGCTTTTACGTTTTCGATAGTGTCAGATGGTTCCACTTCCAGAGTAATTGT 104453 Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||||| ||||||||||| |||||||| ||||| Sbjct 104452 TTTTCCTGTCAAAGTTTTGACAAAAATTTGCAT 104420 >seq9175 Length=65522 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || | ||| ||||| || ||||| || ||| ||||| ||||| ||||| || || Sbjct 22654 CCACCACGTAGACGCAATACTAAATGGAGTGTGGATTCTTTCTGAATGTTGTAGTCGGAC 22713 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || ||| | | || || | || || || ||||| |||| || |||||| || | ||| Sbjct 22714 AGTGTTCTACCATCTTCAAGTTGTTTTCCAGCAAAGATCAATCTCTGTTGGTCTGGTGGA 22773 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||| ||||| || || ||| ||| | | | ||||| | || || Sbjct 22774 ATTCCCTCTTTGTCCTGGATTTTAGCTTTGACATTTTCAATTGTATCTGATGGTTCAACT 22833 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || || || || ||||||||||| ||||| || ||||| Sbjct 22834 TCTAGAGTGATGGTCTTACCAGTCAAAGTTTTGACAAAGATTTGCAT 22880 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 ||||| ||||||||||| |||||||| ||| | | || || | || || |||||||| Sbjct 22918 TCTTTCTGAATATTGTAGTCAGATAGTGTTCTACCATCTTCAAGTTGTTTTCCGGCAAAG 22977 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 |||| || |||||| || | |||| ||||| ||||| || || ||| ||| Sbjct 22978 ATCAATCTCTGTTGGTCTGGTGGAATTCCCTCTTTGTCCTGGATTTTAGCTTTGACATTC 23037 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | ||||| | || || || | ||| || || || || ||||| ||||| || Sbjct 23038 TCAATTGTATCTGATGGTTCAACTTCTAGCGTGATGGTCTTGCCAGTCAATGTTTTGACG 23097 Query 48756 AAAATCTGCAT 48766 || || ||||| Sbjct 23098 AAGATTTGCAT 23108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380591381648079