Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Modiolus_20philippinarum_20[genbank_20GCA_5F002080025.1_202017-04- 05] 74,573 sequences; 2,629,556,424 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq11254 107 4e-18 >seq11254 Length=169933 Score = 107 bits (118), Expect = 4e-18 Identities = 274/415 (66%), Gaps = 4/415 (1%) Strand=Plus/Minus Query 47849 CCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCATGAAGAGG 47908 || || || || ||||| ||||| || || || |||| ||||||||||||||||| Sbjct 70943 CCGACCCTCTTTTCAAAAAAGTTGGTTTTGCCTTCCAGGGAGATGTTCTCCATGAAATTA 70884 Query 47909 AAGGGGTTGGGTGTGTTATACACCCGTG--TCAGGCCCATCTGTTCCAGCAGGTGATCCG 47966 || || || | | || |||| | | | | |||||| |||||| || | Sbjct 70883 AACGGATTTGACGAATTGTACAGTTTTTCATAATTCAAATCTGT--CAGCAGTCTGTCGG 70826 Query 47967 CGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACACGGGCA 48026 | || | || ||||| | |||| | |||| ||||||| || || || ||||| | Sbjct 70825 CTACAAATTCAATGTACTGCCACATCATGGTGTTGTTCATTCCAATCAGTTTGACGGGTA 70766 Query 48027 AAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTTAACGC 48086 | || | || | |||||| | |||||| ||||| ||| ||| |||| | || | Sbjct 70765 ACGCTTCCGTCAAAAACTCTTGTTCTATCAAAACGGCATCCGACACGATCTCGTGTACCC 70706 Query 48087 GGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGT 48146 || |||||||| | |||||| | | | || | ||||||||| | || Sbjct 70705 TATTCTGCGAGGGTTTATGCTTCAGGTGGTCGTTGAAAAGTAGGCAGGCAAATTGATAGT 70646 Query 48147 GCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCC 48206 | || ||||| |||| ||||| ||| ||||| ||| | ||| ||||||| || | Sbjct 70645 GTAAACCTTCATCCCTACTGATTAGCTCGTTGCTGAACGTTAAACCCGGCATGAGACCTC 70586 Query 48207 TCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCAC 48261 | || | ||| |||||||| || ||| ||||| ||||||||||| || || Sbjct 70585 GTTTCTTTAACCAAAAAATTGCAGCAAAACTACCAGAAAAGAAGATGCCTTCTAC 70531 Score = 102 bits (112), Expect = 2e-16 Identities = 184/268 (69%), Gaps = 16/268 (6%) Strand=Plus/Plus Query 38889 GCCACACCGGAGAATGCGTACCTGTCCAACACCAGGCTCGTCCCCCGTTC--CAGCTTCT 38946 ||||| || || | ||||| || ||||| ||||| | | || || | || ||||| Sbjct 26943 GCCACTCCTGAATAGGCGTATCTATCCAAGACCAGCGTGATGCC--GTCCATCAACTTCT 27000 Query 38947 GCTTCATCAGGGGCACCAGCTCCCACCTGTTGGCGGAGAAGAGCAGGTGGACTGCGTGGT 39006 || || | | | ||| ||||| |||||||| || || || || ||||| || |||| Sbjct 27001 TTTTGATGATAGACGCCATTTCCCATCTGTTGGCAGAAAATAGGAGATGGACGGCATGGT 27060 Query 39007 CGTCCAGCTCCGTCTTACTCTCCAGGTACGAGCTGATCATCTTTCCGATGGTAGTGGTTC 39066 ||||||| || | || ||| ||||| || | ||||| || || ||||| || |||| Sbjct 27061 CGTCCAGTTCACTTTTGTTCTGAAGGTAAGAATTAATCATTTTACCAATGGTCGTAGTTC 27120 Query 39067 TGTCGGGGAACCTCATCAGCTCGGCCGGTCTCCCGCTACCTTG------CAGAGCCTCCA 39120 |||| ||||| |||| || || | || ||||||| | ||| || | Sbjct 27121 TGTCTGGGAATTTCATGGTTTCAGC------CACGATACCTTGGTTGTTTAAAGCTTCAA 27174 Query 39121 CCAGCTTTTGACACTGTGTGGTCTTTCC 39148 |||| ||||| || ||||| |||||||| Sbjct 27175 CCAGTTTTTGGCATTGTGTTGTCTTTCC 27202 Score = 89.7 bits (98), Expect = 1e-12 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 213780 GGACACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACC 213839 ||| |||| | |||||||| ||| ||| || | || ||| |||||||| || | | Sbjct 72184 GGAGACATCAATGTCCAGTCCTTGTCCTCTTCCACGCGCTTCATAAACAGGTCTGGAATC 72125 Query 213840 CACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGA 213899 ||||| ||| |||| ||| || | |||| || || ||||| |||||| | Sbjct 72124 CACAGTGCGTAAAACAAGTCTCTCGCCCTCTCTTCTTCGTTTCCAGTGTTTTTCTTCCAC 72065 Query 213900 TCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGC 213959 | | |||||||| | ||| |||||| || |||| ||| ||||||| ||| ||| Sbjct 72064 TGCAAGAAGTCAAACACGTCGAGGTGCCAAGGTTCCAGGTACATGGCAATGGCTCCCATT 72005 Query 213960 CTCTTGCCGCCCTG 213973 |||||||||||||| Sbjct 72004 CTCTTGCCGCCCTG 71991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 930664460056320