Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Modiolus_20philippinarum_20[genbank_20GCA_5F002080025.1_202017-04- 05] 74,573 sequences; 2,629,556,424 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq11254 114 2e-20 >seq11254 Length=169933 Score = 114 bits (126), Expect = 2e-20 Identities = 468/732 (64%), Gaps = 20/732 (3%) Strand=Plus/Plus Query 25601 TGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTCACCA 25660 |||| |||||||| || || || || || ||||| || || |||| || | Sbjct 70232 TGGCTTTCTTTGCTGCAAGCGACGGCATCGTTAACGAAAACCTAGCACAGAGGTTTTGTA 70291 Query 25661 GGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAAAATG 25720 ||||| |||| || ||||| | ||| ||||| || ||||| ||||| ||||| Sbjct 70292 ATGAAGTCCAGTTTCCAGAAGCCAAATCTTTTTACGGATTTCAGATTGCCATGGAAAACA 70351 Query 25721 TGCACTCTGAGGTGTATGCCAAGCTTC-TGATG---ACGTACATTACAGA-CGTCGCCGA 25775 | |||||||| |||| ||||| |||| || | |||| ||| | | || Sbjct 70352 TACACTCTGAAATGTAC----AGCTTGATGATAGATACTTTTATTAAAGATCCTGTACGT 70407 Query 25776 GAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTG 25835 | ||| | | || | || || || |||||| || | ||| |||||| || Sbjct 70408 AA-AGACCAGTTGCTAAACGCAATAGAAACCATACCTTGCGTTCAGAAGAAGGCCAAATG 70466 Query 25836 GGCCATGAAGTGGATCAAC-AGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTG 25894 |||||| || ||||| || | | || ||| |||| || ||| ||| |||| |||| Sbjct 70467 GGCCATAAATTGGATACACGATTCTGATT-CTAATTTTGCCGTGCGACTGCTAGCATTTG 70525 Query 25895 CTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGA 25954 | | || || |||||||| || ||| ||||| || || || ||| | ||| | | Sbjct 70526 CCGTGGTAGAAGGCATCTTCTTTTCTGGTAGTTTTGCTGCAATTTTTTGGTTAAAGAA-A 70584 Query 25955 AGGGGAC-CATGCCCGGGCTGTACTTTTC-CAACGAGCTCATCAGCAGGGACGAGGGTCT 26012 | || | |||||| ||| | || || ||||||||| ||||| ||||| || ||| | Sbjct 70585 CGAGGTCTCATGCC-GGGTTTAACGTTCAGCAACGAGCTAATCAGTAGGGATGAAGGTTT 70643 Query 26013 CCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAAGA 26072 ||| | ||||||||||| || | || | |||| || || ||||| || || | Sbjct 70644 ACACTATCAATTTGCCTGCCTACTTTTCAACGACCACCTGAAGCATAAACCCTCGCAGAA 70703 Query 26073 GACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNNNNN 26132 | || || ||| | || || || ||| || | |||||| Sbjct 70704 TAGGGTACACGAGATCGTGTCGGATGCCGTTTTGATAGAACAAGAGTTTTTGACGGAAGC 70763 Query 26133 NNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGTATGT 26192 | || |||||||||| | ||| | || |||||||| | ||| Sbjct 70764 GTTACCCGTCAAACTGATTGGAATGAACAACACCATGATGTGGCAGTACATTGAATTTGT 70823 Query 26193 GGCCGACCATCTGCTGTGCCAGCTGGGACTC--GCCAGACTCTACAGTACGCCTAACCCG 26250 |||||| |||||| ||| | || | | | ||| |||| | || | || ||| Sbjct 70824 AGCCGACAGACTGCTGA--CAGATTTGAATTATGAAAAACTGTACAATTCGTCAAATCCG 70881 Query 26251 TTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGGTC 26310 || | || ||||| ||||| || ||||||| || |||||||| ||||||||||||||| Sbjct 70882 TTTAATTTCATGGAGAACATCTCCCTGGAAGGCAAAACCAACTTTTTTGAAAAGAGGGTC 70941 Query 26311 GGCGACTATCAA 26322 || | |||||| Sbjct 70942 GGTCAATATCAA 70953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 927978965709120