Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Modiolus_20philippinarum_20[genbank_20GCA_5F002080025.1_202017-04- 05] 74,573 sequences; 2,629,556,424 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq35982 127 2e-24 seq9175 125 6e-24 >seq35982 Length=112201 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| |||||||| |||||| | || || ||||| || ||| ||| ||||||||| Sbjct 104192 ATGCAGATATTTGTGAAAACACTGACAGGGAAAACTATCACCCTTGAAGTAGAACCTTCA 104251 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | ||| |||||| || ||||||||| | || |||||| Sbjct 104252 GACACTATCGAAAATGTAAAGGCCAAAATCCAGGATAAAGAGGGAATTCCTCCAGATCAG 104311 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || | ||||||||||| ||||||||||| |||||| | || || | || || ||| Sbjct 104312 CAACGTCTTATCTTTGCTGGCAAACAATTAGAAGATGGTCGTACATTGTCAGACTACAAC 104371 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || || ||||| || || || || |||| |||||||| ||||||| || Sbjct 104372 ATCCAGAAAGAGTCAACACTTCATTTGGTCTTAAGATTGAGAGGAGGAAT 104421 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| ||||| ||||| || || || ||||| ||||| ||| |||||| || Sbjct 104419 AATGCAAATTTTTGTCAAAACTTTGACAGGAAAAACAATTACTCTGGAAGTGGAACCATC 104478 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | | | || || ||| || ||||| || | || |||||| Sbjct 104479 TGACACTATCGAAAACGTAAAAGCTAAGATCCAAGATAAAGAAGGTATTCCTCCAGATCA 104538 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 || | ||||||||||| || |||||||| |||||| | || || | || || || Sbjct 104539 GCAACGTCTTATCTTTGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCAGACTACAA 104598 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 |||||| ||||| || || || || |||| || ||||| ||||||| || Sbjct 104599 CATTCAGAAAGAGTCAACACTTCATTTGGTCTTGAGATTGAGAGGAGGTAT 104649 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || || |||||| | || || ||||| || || ||| |||||| || Sbjct 104876 ATGCAAATTTTCGTCAAAACACTTACTGGAAAAACAATAACACTTGAAGTGGAACCATCT 104935 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | | | || || |||| || || ||||| || | || |||||| Sbjct 104936 GACACTATCGAAAACGTAAAAGCTAAAATTCAA-GATAAAGAAGGTATTCCTCCAGATCA 104994 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 || | ||||||||||| || |||||||| |||||| | || || | |||||||| Sbjct 104995 GCAACGTCTTATCTTTGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCGGATTATAA 105054 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||| || ||||| || || || || |||| || ||||| ||||||| || Sbjct 105055 CATCCAGAAAGAGTCCACGCTTCATTTGGTCTTGAGATTGAGAGGAGGTAT 105105 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || || |||||| | || || ||||| || || ||| |||||| ||| Sbjct 105104 ATGCAAATTTTCGTCAAAACACTTACCGGAAAAACAATAACACTTGAAGTGGAACCATCA 105163 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | | || || ||| || ||||| || | || |||||| Sbjct 105164 GACACTATCGAAAACGTAAAAGCTAAGATCCAAGATAAAGAAGGTATTCCTCCAGATCAG 105223 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || | ||||||||||| || |||||||| |||||| | || || | ||||| ||| Sbjct 105224 CAACGTCTTATCTTTGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCAGATTACAAC 105283 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || || ||||| || || || || |||| || ||||| ||||||| || Sbjct 105284 ATCCAGAAAGAGTCGACACTTCATTTGGTCTTGAGATTGAGAGGAGGTAT 105333 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || || |||||| | || || ||||| || || ||| |||||| ||| Sbjct 104648 ATGCAAATTTTCGTCAAAACACTTACTGGAAAAACAATAACACTTGAAGTGGAACCATCA 104707 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | | || || ||| || ||||| || | || |||||| Sbjct 104708 GACACTATCGAAAACGTAAAAGCCAAGATCCAAGATAAAGAAGGTATTCCTCCAGATCAG 104767 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || | ||||||||||| || |||||||| |||||| | || || | || || ||| Sbjct 104768 CAACGTCTTATCTTTGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCGGACTACAAC 104827 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || || ||||| || || || || |||| || ||||| ||||||| || Sbjct 104828 ATCCAGAAAGAGTCCACACTTCATTTGGTCTTGAGATTGAGAGGAGGTAT 104877 >seq9175 Length=65522 Score = 125 bits (138), Expect = 6e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| ||||| || || ||||| ||||| || ||| ||||| ||| Sbjct 22880 ATGCAAATCTTTGTCAAAACTTTGACTGGTAAGACCATCACTCTAGAAGTTGAACCATCA 22821 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || |||| |||||| |||||||||||| | || ||| ||| Sbjct 22820 GATACAATTGAAAATGTCAAAGCTAAAATCCAGGACAAAGAGGGAATTCCACCAGACCAA 22761 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 |||||| | |||||||| || |||||| | |||||| || ||| || |||| || ||| Sbjct 22760 CAGAGATTGATCTTTGCTGGAAAACAACTTGAAGATGGTAGAACACTGTCCGACTACAAC 22701 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATT 28765 ||||| |||||||| || || || | ||||| Sbjct 22700 ATTCAGAAAGAATCCACACTCCATTTAGTATT 22669 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || || |||||||| || || || ||||| || ||| ||||| ||| Sbjct 23108 ATGCAAATCTTCGTCAAAACATTGACTGGCAAGACCATCACGCTAGAAGTTGAACCATCA 23049 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || |||| |||||| |||||||||||| | || ||| ||| Sbjct 23048 GATACAATTGAGAATGTCAAAGCTAAAATCCAGGACAAAGAGGGAATTCCACCAGACCAA 22989 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 |||||| | |||||||| || |||||| | |||||| || ||| | | || || || Sbjct 22988 CAGAGATTGATCTTTGCCGGAAAACAACTTGAAGATGGTAGAACACTATCTGACTACAAT 22929 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||| |||||||| || || || | ||| | | | |||||||| || Sbjct 22928 ATTCAGAAAGAATCAACACTCCATCTTGTACTCCGTCTCCGAGGAGGTAT 22879 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || || ||||| || || || || ||||| || ||| ||||| ||| Sbjct 23336 ATGCAAATCTTCGTCAAAACTTTGACTGGCAAGACCATCACTCTAGAAGTTGAACCATCA 23277 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || |||| |||||| |||||||||||| | || ||| ||| Sbjct 23276 GATACAATTGAGAATGTCAAAGCTAAAATCCAGGACAAAGAGGGAATTCCACCAGACCAA 23217 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 |||||| | |||||||| || |||||| | |||||| || ||| | | || || ||| Sbjct 23216 CAGAGATTGATCTTTGCTGGAAAACAACTTGAAGATGGTAGAACACTATCTGACTACAAC 23157 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||| |||||||| || || || | ||| | | | |||||||| || Sbjct 23156 ATTCAGAAAGAATCAACACTCCATCTTGTACTCCGTCTCCGAGGAGGTAT 23107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425018167258167