Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Modiolus_20philippinarum_20[genbank_20GCA_5F002080025.1_202017-04- 05] 74,573 sequences; 2,629,556,424 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq66969 104 1e-17 seq11254 96.9 2e-15 >seq66969 Length=194959 Score = 104 bits (114), Expect = 1e-17 Identities = 105/134 (78%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 25930 CTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTC 25989 || |||||| || |||||||||||||| ||||| |||| ||| || ||||| | ||||| Sbjct 45454 CTTCATAAACAAGTCTGGAATCCACATGGCATAGAATAGATCCCTAGCTCTGTTCTCTTC 45513 Query 25990 TTTTCC-GTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTA 26048 |||||| ||| ||||| || ||| | ||||||||| ||||| | ||||| || || | Sbjct 45514 TTTTCCTGTG-TTCTTCTTACAATCAAGGAAATCAAATATATCAGCATGCCAAGGCTCCA 45572 Query 26049 AATAGATAGCAAAA 26062 || ||||||||| Sbjct 45573 GGTACATAGCAAAA 45586 Score = 86.0 bits (94), Expect = 3e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 25016 AATTCTCCAGACAAAACTCTTCTTATTGATAAGTTTGAAGTGAATGGTTCAAAACATTCA 25075 ||||| |||||||| |||||||| | ||| || || | | ||| | | ||||| Sbjct 30640 AATTCCCCAGACAATACTCTTCTGGTATATATATTACTTGTATAGGCTTCTATAGATTCA 30699 Query 25076 TTATTTCCTAAGATTTGAGAAGTAGATGCTGTTGGCATTAATGCTATTAATAGCGAATTT 25135 ||||| ||||||||||||| |||||| |||||||||||| |||| ||| || ||| Sbjct 30700 TTATTGCCTAAGATTTGAGCAGTAGAAGCTGTTGGCATTGGAGCTAATAACAGGCTGTTT 30759 Query 25136 CTCAAACCAT 25145 || | ||||| Sbjct 30760 CTAACACCAT 30769 >seq11254 Length=169933 Score = 96.9 bits (106), Expect = 2e-15 Identities = 151/213 (71%), Gaps = 5/213 (2%) Strand=Plus/Minus Query 25930 CTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTC 25989 || |||||| | ||||||||||||| ||| ||||| || |||||||| ||| |||||| Sbjct 72146 CTTCATAAACAGGTCTGGAATCCACAGTGCGTAAAACAAGTCTCTCGCCCTCTCTTCTTC 72087 Query 25990 TTTTCC-GTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTA 26048 ||||| ||| || || || | ||||| ||||| | || |||||| ||||| | Sbjct 72086 GTTTCCAGTG-TTTTTCTTCCACTGCAAGAAGTCAAACACGTCGAGGTGCCAAGGTTCCA 72028 Query 26049 AATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTT 26108 || || |||| || |||| || || || |||| ||||||| || || | Sbjct 72027 GGTACATGGCAATGGCTCCCATTCTCTT---GCCGCCCTGATTGGCGTATCTGGCCGTAT 71971 Query 26109 CATTGAAAACTTTCAACATTGGAACTAATCCAG 26141 | || || || |||||||| ||||||| |||| Sbjct 71970 CGTTAAACACCTTCAACATGGGAACTATACCAG 71938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 252810022460975