Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Modiolus_20philippinarum_20[genbank_20GCA_5F002080025.1_202017-04- 05] 74,573 sequences; 2,629,556,424 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq11254 168 1e-36 seq35982 150 3e-31 seq9175 116 5e-21 seq45074 113 7e-20 seq63802 86.0 9e-12 >seq11254 Length=169933 Score = 168 bits (186), Expect = 1e-36 Identities = 375/562 (67%), Gaps = 5/562 (1%) Strand=Plus/Minus Query 18158 CACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAAC 18217 || ||||| | | ||||||||||||||| || |||| ||||| || |||||||| Sbjct 70661 CAGGCAAATTGATAGTGTAAACCTTCATCCCTACTGATTAGCTCGTTGCTGAACGTTAAA 70602 Query 18218 CCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAAT 18277 || ||||| | ||||| ||| |||| |||||| || | || ||||||| ||||||||| Sbjct 70601 CCCGGCATGAGACCTCGTTTCTTTAACCAAAAAATTGCAGCAAAACTACCAGAAAAGAAG 70542 Query 18278 ATACCCTCAACGCACG-CGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTCAG 18336 || || || || |||| | || |||| | || | |||||| | | | | | Sbjct 70541 ATGCCTTCTAC-CACGGCAAATGCTAGCAGTCGCACGGCAAAATTAGAATCAGAATCGTG 70483 Query 18337 TATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATT 18396 |||||| ||| ||||||| | | | || ||||| | ||||| || || Sbjct 70482 TATCCAATTTATGGCCCATTTGGCCTTCTTCTGAACGCAAGGTATGGTTTCTATTGCGTT 70423 Query 18397 AAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACAT 18456 | ||| | ||||| | | |||||| ||| |||| || || | ||| ||||| Sbjct 70422 TAGCAACTGGTCTTTACGTACAGGATCTTTAATAAAAGTATCTATCATCAAGCTGTACAT 70363 Query 18457 TTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATA 18516 |||||| |||||| ||||||| || |||||||| | ||||| ||| | || || ||| | Sbjct 70362 TTCAGAGTGTATGTTTTCCATGGCAATCTGAAATCCGTAAAAAGATTTGGCTTCTGGAAA 70303 Query 18517 TTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGC 18576 || | || || |||| || | | | | || || ||||| || ||||| | || Sbjct 70302 CTGGACTTCATTACAAAACCTCTGTGCTAGGTTTTCGTTAACGATGCCGTCGCTTGCAGC 70243 Query 18577 GAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTT---CCA 18633 || || |||| || | |||||| | ||| || || || | ||||| ||| Sbjct 70242 AAAGAAAGCCAGAATGGACGAAATGAACTTGCGTTCTTTTTCGTTCAATTTGTTCTGCCA 70183 Query 18634 TTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTG 18693 || | | |||| ||| | ||||| ||||| |||||| | || | |||||| Sbjct 70182 ATCTTGAACATCTACTGACAAGTCAACCTCTTCTACAGTCCAATACGAAGCCAGGGCCTG 70123 Query 18694 TTTGTACATTTTATAAATATCT 18715 |||||||| ||| | |||||| Sbjct 70122 CTTGTACATCTTAAATATATCT 70101 >seq35982 Length=112201 Score = 150 bits (166), Expect = 3e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | |||||| | ||||||||||| || ||| | ||||| ||| ||| Sbjct 104876 ATGCAAATTTTCGTCAAAACACTTACTGGAAAAACAATAACACTTGAAGTGGAACCATCT 104935 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| |||||| ||| |||||| |||||||||||||| || |||||||| || Sbjct 104936 GACACTATCGAAAACGTAAAAGCTAAAATTCAAGATAAAGAAGGTATTCCTCCAGATCAG 104995 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | | || | ||| ||||| || | |||||| | || || || |||||||| Sbjct 104996 CAACGTCTTATCTTTGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCGGATTATAAC 105055 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || |||||| | ||||||||||| || || ||||| ||||| ||| Sbjct 105056 ATCCAGAAAGAGTCCACGCTTCATTTGGTCTTGAGATTGAGAGGAGGT 105103 Score = 143 bits (158), Expect = 4e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| | ||||| ||||| |||||||| ||||| | ||||| ||| || Sbjct 104419 AATGCAAATTTTTGTCAAAACTTTGACAGGAAAAACAATTACTCTGGAAGTGGAACCATC 104478 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||| | ||| |||||| ||| ||| || |||||||||||||| || |||||||| || Sbjct 104479 TGACACTATCGAAAACGTAAAAGCTAAGATCCAAGATAAAGAAGGTATTCCTCCAGATCA 104538 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||| | | || | ||| ||||| || | |||||| | || || ||||| || || Sbjct 104539 GCAACGTCTTATCTTTGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCAGACTACAA 104598 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || |||||| | || |||||||| || || ||||| ||||| ||| Sbjct 104599 CATTCAGAAAGAGTCAACACTTCATTTGGTCTTGAGATTGAGAGGAGGT 104647 Score = 136 bits (150), Expect = 6e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | |||||| | || |||||||| || ||| | ||||| ||| || Sbjct 105104 ATGCAAATTTTCGTCAAAACACTTACCGGAAAAACAATAACACTTGAAGTGGAACCATCA 105163 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| |||||| ||| ||| || |||||||||||||| || |||||||| || Sbjct 105164 GACACTATCGAAAACGTAAAAGCTAAGATCCAAGATAAAGAAGGTATTCCTCCAGATCAG 105223 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | | || | ||| ||||| || | |||||| | || || |||||||| || Sbjct 105224 CAACGTCTTATCTTTGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCAGATTACAAC 105283 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || |||||| |||| |||||||| || || ||||| ||||| ||| Sbjct 105284 ATCCAGAAAGAGTCGACACTTCATTTGGTCTTGAGATTGAGAGGAGGT 105331 Score = 123 bits (136), Expect = 4e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | |||||| | ||||||||||| || ||| | ||||| ||| || Sbjct 104648 ATGCAAATTTTCGTCAAAACACTTACTGGAAAAACAATAACACTTGAAGTGGAACCATCA 104707 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| |||||| ||| || || |||||||||||||| || |||||||| || Sbjct 104708 GACACTATCGAAAACGTAAAAGCCAAGATCCAAGATAAAGAAGGTATTCCTCCAGATCAG 104767 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | | || | ||| ||||| || | |||||| | || || || || || || Sbjct 104768 CAACGTCTTATCTTTGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCGGACTACAAC 104827 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || |||||| | || |||||||| || || ||||| ||||| ||| Sbjct 104828 ATCCAGAAAGAGTCCACACTTCATTTGGTCTTGAGATTGAGAGGAGGT 104875 Score = 102 bits (112), Expect = 1e-16 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | |||||| | || |||||||| || ||| | ||||| ||| ||| Sbjct 105332 ATGCAAATTTTCGTCAAAACACTTACAGGAAAAACAATAACACTTGAAGTGGAACCATCT 105391 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| |||||| ||| |||||| |||||||||||||| || |||||||| || Sbjct 105392 GACACTATCGAAAACGTAAAAGCTAAAATTCAAGATAAAGAAGGTATTCCTCCAGATCAG 105451 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 ||| | | || | ||| || || || | |||||| Sbjct 105452 CAACGTCTTATCTTTGCTGGGAAACAATTAGAAGAT 105487 Score = 96.9 bits (106), Expect = 5e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 155894 AAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGAT 155953 |||||| ||| |||||| |||||||||||||| || |||||||| || ||| | | || Sbjct 105749 AAACGTAAAAGCTAAAATTCAAGATAAAGAAGGTATTCCTCCAGATCAGCAACGTCTTAT 105808 Query 155954 TTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAAGA 156013 | ||| ||||| || | |||||| | || || ||||| || || || ||||| Sbjct 105809 CTTTGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCAGACTACAACATCCAGAAAGA 105868 Query 156014 GGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 | | || |||||||||||||| | || ||||| || Sbjct 105869 GTCAACCCTTCATTTAGTGTTGCGTTTGAGAGGAGG 105904 >seq9175 Length=65522 Score = 116 bits (128), Expect = 5e-21 Identities = 135/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | |||||||||||||| || || || || ||||||| ||| || Sbjct 23108 ATGCAAATCTTCGTCAAAACATTGACTGGCAAGACCATCACGCTAGAAGTTGAACCATCA 23049 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || ||| |||||| || || ||||| || || || ||||| ||| Sbjct 23048 GATACAATTGAGAATGTCAAAGCTAAAATCCAGGACAAAGAGGGAATTCCACCAGACCAA 22989 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || |||||||| | |||||| || || || |||||| ||||| |||| || || ||| Sbjct 22988 CAGAGATTGATCTTTGCCGGAAAACAACTTGAAGATGGTAGAACACTATCTGACTACAAT 22929 Query 156003 AT 156004 || Sbjct 22928 AT 22927 >seq45074 Length=316632 Score = 113 bits (124), Expect = 7e-20 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 18541 TACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCAAAACATATTTAAT 18600 ||||| ||| ||||| || || || ||| || || || ||||||||||||| ||| Sbjct 225508 TACCAGATTTTCATTTACAATTCCATCACTAGCAGCAAAGAATGCCAAAACATGGGAAAT 225567 Query 18601 GAAATGTTTTTCATTATCCTTGAGATTGTTCCATTCATCTATATCTTTTGATAGATCAAC 18660 ||||||| | || | |||||| | | | | ||| | | | ||||||||| | |||||| Sbjct 225568 GAAATGTCTCTCTTCATCCTTTAAAGTTTCCCAGTGCACCAAATCTTTTGACAAATCAAC 225627 Query 18661 TTCTTCCGATGTCCAAAAAGATGATTCGGCCTGTTTGTACATTTTATAAATATCTTCATG 18720 |||||| | ||||||||||| | ||| |||| |||||||||| |||| || | || Sbjct 225628 TTCTTCTGCAGTCCAAAAAGAGGCTTCTGCCTTCTTGTACATTTGCCAAATGTCGTGATA 225687 Query 18721 TTGTATAGGAAATAATATATATCGT 18745 || || || || | | | ||||| Sbjct 225688 CTGAATTGGGAAGACAACAAATCGT 225712 Score = 89.7 bits (98), Expect = 8e-13 Identities = 144/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 18199 TTCGTTACTAAACGTTAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGC 18258 ||| ||||| || || | || ||||| || |||| ||||| ||||||||||| | ||| Sbjct 222999 TTCATTACTGAAGGTAAGACCAGGCATAATTCCTCGCTTTTTGAGCCAAAATATAGCTGC 223058 Query 18259 GAAACTACTAGAAAAGAATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCA-A 18317 ||||||| ||| || ||||| || ||||| || || || | | ||| || ||| | Sbjct 223059 AAAACTACCAGAGAAAAATATCCCTTCAACTGCTGCAAATGCCACAACTCTCTCTGCATA 223118 Query 18318 AACTGTATTTATTGCTCA-GTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACAC 18376 | ||| |||| || ||| ||||||||| | ||||| ||| ||| | ||| Sbjct 223119 AGCTGCATTTTTT--TCATTTATCCATTTCAGAGCCCAATCTGCTTTCTCTTTTACACAT 223176 Query 18377 GGTATACTCTCTATAGCATTAAACAA 18402 || || | || || ||||| ||||| Sbjct 223177 GGCATTGTTTCAATGGCATTGAACAA 223202 >seq63802 Length=43549 Score = 86.0 bits (94), Expect = 9e-12 Identities = 73/89 (82%), Gaps = 1/89 (1%) Strand=Plus/Plus Query 155924 AGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAG 155983 ||| ||||||||||| ||||| |||||||| | ||||||||| ||| | |||||| ||| Sbjct 21793 AGGTATACCTCCAGATCAACAGAGATTGATATTTGCCGGTAAACAGTTGGAAGATGGCAG 21852 Query 155984 AACTTTATCAGATTATAATATATCCAAAG 156012 ||| || ||||| || ||||| || |||| Sbjct 21853 AACATTGTCAGACTACAATAT-TCAAAAG 21880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731189776366800