Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Modiolus_20philippinarum_20[genbank_20GCA_5F002080025.1_202017-04- 05] 74,573 sequences; 2,629,556,424 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq9175 161 2e-34 seq35982 145 2e-29 seq45074 118 2e-21 seq11254 100 6e-16 seq39591 84.2 4e-11 >seq9175 Length=65522 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 ||||| | ||||| ||||||||||| | || | ||||| || || || || || Sbjct 22654 CCACCACGTAGACGCAATACTAAATGGAGTGTGGATTCTTTCTGAATGTTGTAGTCGGAC 22713 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | ||||| |||| || | |||||| ||||||||||| ||||||||||| || ||||| Sbjct 22714 AGTGTTCTACCATCTTCAAGTTGTTTTCCAGCAAAGATCAATCTCTGTTGGTCTGGTGGA 22773 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 ||||| ||||| || || |||||| ||| ||||| || | |||||| | ||| ||| Sbjct 22774 ATTCCCTCTTTGTCCTGGATTTTAGCTTTGACATTTTCAATTGTATCTGATGGTTCAACT 22833 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 |||||||| ||||| |||||||| || ||||| | ||| || ||||| Sbjct 22834 TCTAGAGTGATGGTCTTACCAGTCAAAGTTTTGACAAAGATTTGCAT 22880 Score = 154 bits (170), Expect = 3e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| |||| ||||| | ||| | ||| | || | ||||| ||||| || ||| Sbjct 22879 ATACCTCCTCGGAGACGGAGTACAAGATGGAGTGTTGATTCTTTCTGAATATTGTAGTCA 22938 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 |||| ||||| |||| || | |||||| || |||||||| ||||||||||| || ||| Sbjct 22939 GATAGTGTTCTACCATCTTCAAGTTGTTTTCCGGCAAAGATCAATCTCTGTTGGTCTGGT 22998 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| ||||| || || |||||| ||| ||||| || | |||||| | ||| Sbjct 22999 GGAATTCCCTCTTTGTCCTGGATTTTAGCTTTGACATTCTCAATTGTATCTGATGGTTCA 23058 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 |||||||| || ||||| || ||||| |||||||| | || || ||||| Sbjct 23059 ACTTCTAGCGTGATGGTCTTGCCAGTCAATGTTTTGACGAAGATTTGCAT 23108 Score = 154 bits (170), Expect = 3e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| |||| ||||| | ||| | ||| | || | ||||| || || || ||| Sbjct 23107 ATACCTCCTCGGAGACGGAGTACAAGATGGAGTGTTGATTCTTTCTGAATGTTGTAGTCA 23166 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 |||| ||||| |||| || | |||||| ||||||||||| ||||||||||| || ||| Sbjct 23167 GATAGTGTTCTACCATCTTCAAGTTGTTTTCCAGCAAAGATCAATCTCTGTTGGTCTGGT 23226 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| ||||| || || |||||| ||| ||||| || | |||||| | ||| Sbjct 23227 GGAATTCCCTCTTTGTCCTGGATTTTAGCTTTGACATTCTCAATTGTATCTGATGGTTCA 23286 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||||||||| ||||| || ||||| || ||||| | || || ||||| Sbjct 23287 ACTTCTAGAGTGATGGTCTTGCCAGTCAAAGTTTTGACGAAGATTTGCAT 23336 >seq35982 Length=112201 Score = 145 bits (160), Expect = 2e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| ||||| | | || || ||||| | || | |||||| ||| |||||||| Sbjct 105105 ATACCTCCTCTCAATCTCAAGACCAAATGAAGCGTGGACTCTTTCTGGATGTTATAATCC 105046 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || ||||| || |||| || |||||||||||||||||||| | | || ||||| || Sbjct 105045 GACAATGTACGACCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGA 104986 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||||||||| |||||| |||||| || |||| || || | ||| Sbjct 104985 GGAATACCTTCTTTATCTTGAATTTTAGCTTTTACGTTTTCGATAGTGTCAGATGGTTCC 104926 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| || || || ||||| ||||| | |||||| | || || ||||| Sbjct 104925 ACTTCAAGTGTTATTGTTTTTCCAGTAAGTGTTTTGACGAAAATTTGCAT 104876 Score = 140 bits (154), Expect = 6e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || ||||| | | ||| || ||||| | || | |||||| ||| || || || Sbjct 104421 ATTCCTCCTCTCAATCTTAAGACCAAATGAAGTGTTGACTCTTTCTGGATGTTGTAGTCT 104362 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || ||||| || |||| || |||||||| ||||||||||| | | || ||||| || Sbjct 104361 GACAATGTACGACCATCTTCTAATTGTTTGCCAGCAAAGATAAGACGTTGCTGATCTGGA 104302 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| |||||||| || ||||| |||||||| |||| ||||| | |||| Sbjct 104301 GGAATTCCCTCTTTATCCTGGATTTTGGCCTTTACATTTTCGATAGTGTCTGAAGGTTCT 104242 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| || || || ||||| || || | |||||| | |||||||||||| Sbjct 104241 ACTTCAAGGGTGATAGTTTTCCCTGTCAGTGTTTTCACAAATATCTGCAT 104192 Score = 138 bits (152), Expect = 2e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| ||||| | | || || ||||| | || | |||||| || || || || Sbjct 104649 ATACCTCCTCTCAATCTCAAGACCAAATGAAGTGTTGACTCTTTCTGAATGTTGTAGTCT 104590 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || ||||| || |||| || |||||||||||||||||||| | | || ||||| || Sbjct 104589 GACAATGTACGACCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGA 104530 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||||||||| || ||| |||||| || |||| || || | ||| Sbjct 104529 GGAATACCTTCTTTATCTTGGATCTTAGCTTTTACGTTTTCGATAGTGTCAGATGGTTCC 104470 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||| |||||||| ||||| || || || ||||| | ||| || |||||| Sbjct 104469 ACTTCCAGAGTAATTGTTTTTCCTGTCAAAGTTTTGACAAAAATTTGCATT 104419 Score = 136 bits (150), Expect = 8e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| ||||| | | || || ||||| | || | |||||| ||| || ||||| Sbjct 105333 ATACCTCCTCTCAATCTCAAGACCAAATGAAGTGTCGACTCTTTCTGGATGTTGTAATCT 105274 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || ||||| || |||| || |||||||||||||||||||| | | || ||||| || Sbjct 105273 GACAATGTACGACCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGA 105214 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||||||||| || ||| |||||| || |||| ||||| | ||| Sbjct 105213 GGAATACCTTCTTTATCTTGGATCTTAGCTTTTACGTTTTCGATAGTGTCTGATGGTTCC 105154 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| || || || ||||| || || | |||||| | || || ||||| Sbjct 105153 ACTTCAAGTGTTATTGTTTTTCCGGTAAGTGTTTTGACGAAAATTTGCAT 105104 Score = 131 bits (144), Expect = 3e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| ||||| | | || || ||||| | || | |||||| ||| || || || Sbjct 104877 ATACCTCCTCTCAATCTCAAGACCAAATGAAGTGTGGACTCTTTCTGGATGTTGTAGTCC 104818 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || ||||| || |||| || |||||||||||||||||||| | | || ||||| || Sbjct 104817 GACAATGTACGACCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGA 104758 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||||||||| || || |||||| || |||| ||||| | ||| Sbjct 104757 GGAATACCTTCTTTATCTTGGATCTTGGCTTTTACGTTTTCGATAGTGTCTGATGGTTCC 104698 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| || || || ||||| ||||| | |||||| | || || ||||| Sbjct 104697 ACTTCAAGTGTTATTGTTTTTCCAGTAAGTGTTTTGACGAAAATTTGCAT 104648 Score = 113 bits (124), Expect = 9e-20 Identities = 118/155 (76%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 || ||||| | ||| || |||||||| | || | |||||| ||| || || || || Sbjct 105904 CCTCCTCTCAAACGCAACACTAAATGAAGGGTTGACTCTTTCTGGATGTTGTAGTCTGAC 105845 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 ||||| || |||| || |||||||||||||||||||| | | || ||||| || || Sbjct 105844 AATGTACGACCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGAGGA 105785 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATT 192464 || |||||||||||||| |||||| |||||| || Sbjct 105784 ATACCTTCTTTATCTTGAATTTTAGCTTTTACGTT 105750 Score = 105 bits (116), Expect = 1e-17 Identities = 129/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 192361 TAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGA 192420 || || || || || || |||| || |||||||| ||||||||||| | | || ||| Sbjct 105507 TAGTCTGACAACGTACGACCATCTTCTAATTGTTTCCCAGCAAAGATAAGACGTTGCTGA 105448 Query 192421 TCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGAC 192480 || || || || |||||||||||||| |||||| |||||| || |||| || || Sbjct 105447 TCTGGAGGAATACCTTCTTTATCTTGAATTTTAGCTTTTACGTTTTCGATAGTGTCAGAT 105388 Query 192481 GATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 | ||| ||||| || || || ||||| || || | |||||| | || || ||||| Sbjct 105387 GGTTCCACTTCAAGTGTTATTGTTTTTCCTGTAAGTGTTTTGACGAAAATTTGCAT 105332 >seq45074 Length=316632 Score = 118 bits (130), Expect = 2e-21 Identities = 164/228 (72%), Gaps = 10/228 (4%) Strand=Plus/Plus Query 49846 CCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTT 49905 |||| |||||| |||| ||||||||| || || | || ||||| | ||||| ||||| Sbjct 222980 CCTCATCCCTACTGATAAGTTCATTACTGAAGGTAAGACCAGGCATAATTCCTCGCTTTT 223039 Query 49906 TAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTCGACACACGCAAATG 49965 | ||||||||||| | ||||||||||| ||| || ||||| || || || ||||||| Sbjct 223040 TGAGCCAAAATATAGCTGCAAAACTACCAGAGAAAAATATCCCTTCAACTGCTGCAAATG 223099 Query 49966 CTATTATTCTTGCTCCAAA-----CATTAATTTATCATCTAATATCCAATTTATAGCCCA 50020 | | | ||| || || | |||| ||| |||| |||||| || | |||||| Sbjct 223100 CCACAACTCTCTCTGCATAAGCTGCATT--TTTTTCAT---TTATCCATTTCAGAGCCCA 223154 Query 50021 ATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAATAA 50068 ||||||||| | ||| | | | || || |||| || || || || || Sbjct 223155 ATCTGCTTTCTCTTTTACACATGGCATTGTTTCAATGGCATTGAACAA 223202 >seq11254 Length=169933 Score = 100 bits (110), Expect = 6e-16 Identities = 161/226 (71%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 49839 TGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCT 49898 |||||||| || |||||| || | || || || || ||||| || ||||| | ||| Sbjct 70646 TGTAAACCTTCATCCCTACTGATTAGCTCGTTGCTGAACGTTAAACCCGGCATGAGACCT 70587 Query 49899 CTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTCGACACAC 49958 | || || | |||||| |||| |||||||||| ||||||||| || || || || ||| Sbjct 70586 CGTTTCTTTAACCAAAAAATTGCAGCAAAACTACCAGAAAAGAAGATGCCTTCTAC-CAC 70528 Query 49959 G-CAAATGCTATTATTCTTGCTCCAAACATTA-ATTTATCATCTAATATCCAATTTATAG 50016 | ||||||||| | || | |||| |||| | | | ||| |||||||||||| | Sbjct 70527 GGCAAATGCTAGCAGTCGCACGGCAAA-ATTAGAATCAGAATCGTGTATCCAATTTATGG 70469 Query 50017 CCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTT 50062 |||| | || || || | | ||||||| ||||||| || || Sbjct 70468 CCCATTTGGCCTTCTTCTGAACGCAAGGTATGGTTTCTATTGCGTT 70423 >seq39591 Length=213653 Score = 84.2 bits (92), Expect = 4e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 192340 GTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCA 192399 |||| ||||| ||| |||||||| || ||||| | | |||| ||||| ||||||||| Sbjct 29174 GTAGATTCTTTCTGGATGTTATAATCGGACAATGTCCTTCCATCCTCCAACTGTTTACCA 29115 Query 192400 GCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCT 192435 |||||||| ||||| || ||||| || || || ||| Sbjct 29114 GCAAAGATCAATCTTTGCTGATCTGGGGGAATACCT 29079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 983539362278550