Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Modiolus_20philippinarum_20[genbank_20GCA_5F002080025.1_202017-04- 05] 74,573 sequences; 2,629,556,424 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq9175 149 1e-30 seq35982 131 3e-25 seq45074 111 3e-19 seq11254 105 1e-17 >seq9175 Length=65522 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 ||||| | || || ||||||||||| | || | ||||| ||| || || || || Sbjct 22654 CCACCACGTAGACGCAATACTAAATGGAGTGTGGATTCTTTCTGAATGTTGTAGTCGGAC 22713 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 | | || | || || | |||||| |||||||| || |||||||||||||| ||||| Sbjct 22714 AGTGTTCTACCATCTTCAAGTTGTTTTCCAGCAAAGATCAATCTCTGTTGGTCTGGTGGA 22773 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 ||||| ||||| || || |||||| ||| ||||| || |||||||| | ||| ||| Sbjct 22774 ATTCCCTCTTTGTCCTGGATTTTAGCTTTGACATTTTCAATTGTATCTGATGGTTCAACT 22833 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 |||||||| ||||| |||||||| || ||||| | || || ||||| Sbjct 22834 TCTAGAGTGATGGTCTTACCAGTCAAAGTTTTGACAAAGATTTGCAT 22880 Score = 145 bits (160), Expect = 1e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| |||| || || | ||| | ||| | || | ||||| |||||| || || Sbjct 22879 ATACCTCCTCGGAGACGGAGTACAAGATGGAGTGTTGATTCTTTCTGAATATTGTAGTCA 22938 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 |||| | || | || || | |||||| || ||||| || |||||||||||||| ||| Sbjct 22939 GATAGTGTTCTACCATCTTCAAGTTGTTTTCCGGCAAAGATCAATCTCTGTTGGTCTGGT 22998 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||| ||||| || || |||||| ||| ||||| || |||||||| | ||| Sbjct 22999 GGAATTCCCTCTTTGTCCTGGATTTTAGCTTTGACATTCTCAATTGTATCTGATGGTTCA 23058 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 |||||||| || ||||| || ||||| |||||||| | ||| || ||||| Sbjct 23059 ACTTCTAGCGTGATGGTCTTGCCAGTCAATGTTTTGACGAAGATTTGCAT 23108 Score = 145 bits (160), Expect = 1e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| |||| || || | ||| | ||| | || | ||||| ||| || || || Sbjct 23107 ATACCTCCTCGGAGACGGAGTACAAGATGGAGTGTTGATTCTTTCTGAATGTTGTAGTCA 23166 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 |||| | || | || || | |||||| |||||||| || |||||||||||||| ||| Sbjct 23167 GATAGTGTTCTACCATCTTCAAGTTGTTTTCCAGCAAAGATCAATCTCTGTTGGTCTGGT 23226 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||| ||||| || || |||||| ||| ||||| || |||||||| | ||| Sbjct 23227 GGAATTCCCTCTTTGTCCTGGATTTTAGCTTTGACATTCTCAATTGTATCTGATGGTTCA 23286 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||||||||| ||||| || ||||| || ||||| | ||| || ||||| Sbjct 23287 ACTTCTAGAGTGATGGTCTTGCCAGTCAAAGTTTTGACGAAGATTTGCAT 23336 >seq35982 Length=112201 Score = 131 bits (144), Expect = 3e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| ||||| | || || || ||||| | || | |||||| || |||||||| Sbjct 105105 ATACCTCCTCTCAATCTCAAGACCAAATGAAGCGTGGACTCTTTCTGGATGTTATAATCC 105046 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | || | || || ||||||||||||||||| || | | || || || || Sbjct 105045 GACAATGTACGACCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGA 104986 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||||||||| |||||| |||||| || ||||| || || | ||| Sbjct 104985 GGAATACCTTCTTTATCTTGAATTTTAGCTTTTACGTTTTCGATAGTGTCAGATGGTTCC 104926 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| || || || ||||| ||||| | |||||| | ||| || ||||| Sbjct 104925 ACTTCAAGTGTTATTGTTTTTCCAGTAAGTGTTTTGACGAAAATTTGCAT 104876 Score = 129 bits (142), Expect = 1e-24 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| ||||| | || || || ||||| | || | |||||| ||| || || ||| Sbjct 104649 ATACCTCCTCTCAATCTCAAGACCAAATGAAGTGTTGACTCTTTCTGAATGTTGTAGTCT 104590 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | || | || || ||||||||||||||||| || | | || || || || Sbjct 104589 GACAATGTACGACCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGA 104530 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||||||||| || ||| |||||| || ||||| || || | ||| Sbjct 104529 GGAATACCTTCTTTATCTTGGATCTTAGCTTTTACGTTTTCGATAGTGTCAGATGGTTCC 104470 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| |||||||| ||||| || || || ||||| | || || |||||| Sbjct 104469 ACTTCCAGAGTAATTGTTTTTCCTGTCAAAGTTTTGACAAAAATTTGCATT 104419 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| ||||| | || || || ||||| | || | |||||| || || |||||| Sbjct 105333 ATACCTCCTCTCAATCTCAAGACCAAATGAAGTGTCGACTCTTTCTGGATGTTGTAATCT 105274 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | || | || || ||||||||||||||||| || | | || || || || Sbjct 105273 GACAATGTACGACCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGA 105214 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||||||||| || ||| |||||| || ||||| ||||| | ||| Sbjct 105213 GGAATACCTTCTTTATCTTGGATCTTAGCTTTTACGTTTTCGATAGTGTCTGATGGTTCC 105154 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| || || || ||||| || || | |||||| | ||| || ||||| Sbjct 105153 ACTTCAAGTGTTATTGTTTTTCCGGTAAGTGTTTTGACGAAAATTTGCAT 105104 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || ||||| | || ||| || ||||| | || | |||||| || || || ||| Sbjct 104421 ATTCCTCCTCTCAATCTTAAGACCAAATGAAGTGTTGACTCTTTCTGGATGTTGTAGTCT 104362 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | || | || || |||||||| |||||||| || | | || || || || Sbjct 104361 GACAATGTACGACCATCTTCTAATTGTTTGCCAGCAAAGATAAGACGTTGCTGATCTGGA 104302 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||| |||||||| || ||||| |||||||| ||||| ||||| | |||| Sbjct 104301 GGAATTCCCTCTTTATCCTGGATTTTGGCCTTTACATTTTCGATAGTGTCTGAAGGTTCT 104242 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| || || || ||||| || || | |||||| | ||||||||||| Sbjct 104241 ACTTCAAGGGTGATAGTTTTCCCTGTCAGTGTTTTCACAAATATCTGCAT 104192 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| ||||| | || || || ||||| | || | |||||| || || || || Sbjct 104877 ATACCTCCTCTCAATCTCAAGACCAAATGAAGTGTGGACTCTTTCTGGATGTTGTAGTCC 104818 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | || | || || ||||||||||||||||| || | | || || || || Sbjct 104817 GACAATGTACGACCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGA 104758 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||||||||| || || |||||| || ||||| ||||| | ||| Sbjct 104757 GGAATACCTTCTTTATCTTGGATCTTGGCTTTTACGTTTTCGATAGTGTCTGATGGTTCC 104698 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| || || || ||||| ||||| | |||||| | ||| || ||||| Sbjct 104697 ACTTCAAGTGTTATTGTTTTTCCAGTAAGTGTTTTGACGAAAATTTGCAT 104648 Score = 102 bits (112), Expect = 1e-16 Identities = 128/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 171894 TAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGG 171953 || ||||| || | || | || || |||||||| |||||||| || | | || || Sbjct 105507 TAGTCTGACAACGTACGACCATCTTCTAATTGTTTCCCAGCAAAGATAAGACGTTGCTGA 105448 Query 171954 TCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGAC 172013 || || || || |||||||||||||| |||||| |||||| || ||||| || || Sbjct 105447 TCTGGAGGAATACCTTCTTTATCTTGAATTTTAGCTTTTACGTTTTCGATAGTGTCAGAT 105388 Query 172014 GATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 | ||| ||||| || || || ||||| || || | |||||| | ||| || ||||| Sbjct 105387 GGTTCCACTTCAAGTGTTATTGTTTTTCCTGTAAGTGTTTTGACGAAAATTTGCAT 105332 Score = 87.8 bits (96), Expect = 3e-12 Identities = 119/165 (72%), Gaps = 1/165 (1%) Strand=Plus/Minus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||||| | || ||||| | || || |||||||| | || | |||||| || || Sbjct 105913 TTTCATTGT-CCTCCTCTCAAACGCAACACTAAATGAAGGGTTGACTCTTTCTGGATGTT 105855 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || ||||| || | || | || || ||||||||||||||||| || | | || || Sbjct 105854 GTAGTCTGACAATGTACGACCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGCTG 105795 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATT 171997 || || || || |||||||||||||| |||||| |||||| || Sbjct 105794 ATCTGGAGGAATACCTTCTTTATCTTGAATTTTAGCTTTTACGTT 105750 >seq45074 Length=316632 Score = 111 bits (122), Expect = 3e-19 Identities = 161/226 (71%), Gaps = 10/226 (4%) Strand=Plus/Plus Query 39150 TCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTTTA 39209 || |||||| |||| ||||||||| || || | || ||||| | ||||| |||||| Sbjct 222982 TCATCCCTACTGATAAGTTCATTACTGAAGGTAAGACCAGGCATAATTCCTCGCTTTTTG 223041 Query 39210 AGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTCCACACACGCAAATGCT 39269 ||||||||||| | ||||||||||| ||| || ||||| || || || |||||||| Sbjct 223042 AGCCAAAATATAGCTGCAAAACTACCAGAGAAAAATATCCCTTCAACTGCTGCAAATGCC 223101 Query 39270 ATTATTCTTGCTCCAAA-----CATTAATTTATCATCTAAAATCCAATTTATGGCCCAAT 39324 | | ||| || || | |||| ||| |||| | ||||| || | ||||||| Sbjct 223102 ACAACTCTCTCTGCATAAGCTGCATT--TTTTTCATTT---ATCCATTTCAGAGCCCAAT 223156 Query 39325 CTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAATAA 39370 ||||||| | ||| | | | || || |||| || || || || || Sbjct 223157 CTGCTTTCTCTTTTACACATGGCATTGTTTCAATGGCATTGAACAA 223202 Score = 104 bits (114), Expect = 4e-17 Identities = 154/217 (71%), Gaps = 1/217 (0%) Strand=Plus/Plus Query 39506 TTCA-ACTAAATTCTCAGATACAATACCATCAGATGCTGCGAAGAATGCTAAAACATATT 39564 |||| || | ||| ||| |||||| |||||| || || |||||||| ||||||| Sbjct 225504 TTCATACCAGATTTTCATTTACAATTCCATCACTAGCAGCAAAGAATGCCAAAACATGGG 225563 Query 39565 TAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCAAGATTCAAGATCGTTTGATAAAT 39624 ||| |||||| | || | ||| |||||| ||||||| | | ||| ||||| |||| Sbjct 225564 AAATGAAATGTCTCTCTTCATCCTTTAAAGTTTCCCAGTGCACCAAATCTTTTGACAAAT 225623 Query 39625 CTACTTCTTCTATTGTCCAAAAAGATGCTACGGATTTTTTATACATTTGATATATATCAA 39684 | ||||||||| ||||||||||| ||| | | || || |||||||| | || || Sbjct 225624 CAACTTCTTCTGCAGTCCAAAAAGAGGCTTCTGCCTTCTTGTACATTTGCCAAATGTCGT 225683 Query 39685 AATGTTCAATGGGAAATAACACATATCGTTTAGTATT 39721 || | ||| || || | ||| ||||| || ||| Sbjct 225684 GATACTGAATTGGGAAGACAACAAATCGTCGAGGATT 225720 >seq11254 Length=169933 Score = 105 bits (116), Expect = 1e-17 Identities = 162/226 (72%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 39141 TGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCT 39200 ||||||||||| |||||| || | || || || || ||||| || ||||| | ||| Sbjct 70646 TGTAAACCTTCATCCCTACTGATTAGCTCGTTGCTGAACGTTAAACCCGGCATGAGACCT 70587 Query 39201 CTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTCCACACAC 39260 | || || | |||||| |||| |||||||||| ||||||||| || || || || ||| Sbjct 70586 CGTTTCTTTAACCAAAAAATTGCAGCAAAACTACCAGAAAAGAAGATGCCTTCTAC-CAC 70528 Query 39261 -GCAAATGCTATTATTCTTGCTCCAAACATTA-ATTTATCATCTAAAATCCAATTTATGG 39318 |||||||||| | || | |||| |||| | | | ||| ||||||||||||| Sbjct 70527 GGCAAATGCTAGCAGTCGCACGGCAAA-ATTAGAATCAGAATCGTGTATCCAATTTATGG 70469 Query 39319 CCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTT 39364 |||| | || || || | | ||||||| ||||||| || || Sbjct 70468 CCCATTTGGCCTTCTTCTGAACGCAAGGTATGGTTTCTATTGCGTT 70423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904292266163400