Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Modiolus_20philippinarum_20[genbank_20GCA_5F002080025.1_202017-04- 05] 74,573 sequences; 2,629,556,424 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq35982 185 2e-41 seq9175 183 6e-41 seq1561 114 3e-20 seq39591 93.3 8e-14 seq63802 89.7 1e-12 >seq35982 Length=112201 Score = 185 bits (204), Expect = 2e-41 Identities = 179/230 (78%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||||||||| | || || || || || || || |||||||| || || || || | Sbjct 104648 TACCTCCTCTCAATCTCAAGACCAAATGAAGTGTTGACTCTTTCTGAATGTTGTAGTCTG 104589 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | ||| ||||||| |||||| ||||||||||| || | ||| |||||||||| Sbjct 104588 ACAATGTACGACCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGAG 104529 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| |||||||| ||||| |||||||| ||||| || || ||| ||||| | Sbjct 104528 GAATACCTTCTTTATCTTGGATCTTAGCTTTTACGTTTTCGATAGTGTCAGATGGTTCCA 104469 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||||| ||| || || || |||||||| || || ||||| || |||||| Sbjct 104468 CTTCCAGAGTAATTGTTTTTCCTGTCAAAGTTTTGACAAAAATTTGCATT 104419 Score = 170 bits (188), Expect = 4e-37 Identities = 175/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||||||||| | || || || || || || || |||||||| || |||||||| | Sbjct 105104 TACCTCCTCTCAATCTCAAGACCAAATGAAGCGTGGACTCTTTCTGGATGTTATAATCCG 105045 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | ||| ||||||| |||||| ||||||||||| || | ||| |||||||||| Sbjct 105044 ACAATGTACGACCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGAG 104985 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| ||||||||||| || |||||||| ||||| || || ||| ||||| | Sbjct 104984 GAATACCTTCTTTATCTTGAATTTTAGCTTTTACGTTTTCGATAGTGTCAGATGGTTCCA 104925 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| | ||||| || || || || | || || || || || ||||| Sbjct 104924 CTTCAAGTGTTATTGTTTTTCCAGTAAGTGTTTTGACGAAAATTTGCAT 104876 Score = 167 bits (184), Expect = 5e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||||||||| | | || || || || || || |||||||| || || || || || Sbjct 104418 CCTCCTCTCAATCTTAAGACCAAATGAAGTGTTGACTCTTTCTGGATGTTGTAGTCTGAC 104359 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | ||| ||||||| |||||| ||||||||||| || | ||| ||||||||||| Sbjct 104358 AATGTACGACCATCTTCTAATTGTTTGCCAGCAAAGATAAGACGTTGCTGATCTGGAGGA 104299 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||| || ||||| || || || || ||||||||||| || || || |||||||||| Sbjct 104298 ATTCCCTCTTTATCCTGGATTTTGGCCTTTACATTTTCGATAGTGTCTGAAGGTTCTACT 104239 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || || || ||||||| || || |||||||||||||| Sbjct 104238 TCAAGGGTGATAGTTTTCCCTGTCAGTGTTTTCACAAATATCTGCAT 104192 Score = 161 bits (178), Expect = 2e-34 Identities = 173/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||||||||| | || || || || || || || |||||||| || || ||||| | Sbjct 105332 TACCTCCTCTCAATCTCAAGACCAAATGAAGTGTCGACTCTTTCTGGATGTTGTAATCTG 105273 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | ||| ||||||| |||||| ||||||||||| || | ||| |||||||||| Sbjct 105272 ACAATGTACGACCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGAG 105213 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| |||||||| ||||| |||||||| ||||| || || || ||||| | Sbjct 105212 GAATACCTTCTTTATCTTGGATCTTAGCTTTTACGTTTTCGATAGTGTCTGATGGTTCCA 105153 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| | ||||| || || || || | || || || || || ||||| Sbjct 105152 CTTCAAGTGTTATTGTTTTTCCGGTAAGTGTTTTGACGAAAATTTGCAT 105104 Score = 156 bits (172), Expect = 8e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||||||||| | || || || || || || || |||||||| || || || || | Sbjct 104876 TACCTCCTCTCAATCTCAAGACCAAATGAAGTGTGGACTCTTTCTGGATGTTGTAGTCCG 104817 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | ||| ||||||| |||||| ||||||||||| || | ||| |||||||||| Sbjct 104816 ACAATGTACGACCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGAG 104757 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| |||||||| ||||| |||||||| ||||| || || || ||||| | Sbjct 104756 GAATACCTTCTTTATCTTGGATCTTGGCTTTTACGTTTTCGATAGTGTCTGATGGTTCCA 104697 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| | ||||| || || || || | || || || || || ||||| Sbjct 104696 CTTCAAGTGTTATTGTTTTTCCAGTAAGTGTTTTGACGAAAATTTGCAT 104648 Score = 149 bits (164), Expect = 1e-30 Identities = 133/167 (80%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 |||||||||||||||| ||||| || || || || |||||||| || || || || || Sbjct 105904 CCTCCTCTCAAACGCAACACTAAATGAAGGGTTGACTCTTTCTGGATGTTGTAGTCTGAC 105845 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | ||| ||||||| |||||| ||||||||||| || | ||| ||||||||||| Sbjct 105844 AATGTACGACCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGAGGA 105785 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATC 82750 || ||||| ||||||||||| || |||||||| ||||| || || || Sbjct 105784 ATACCTTCTTTATCTTGAATTTTAGCTTTTACGTTTTCGATAGTGTC 105738 Score = 134 bits (148), Expect = 3e-26 Identities = 125/159 (79%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 82652 ACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTC 82711 ||| ||||||| |||||| ||||||||||| || | ||| ||||||||||| || ||||| Sbjct 105490 ACCATCTTCTAATTGTTTCCCAGCAAAGATAAGACGTTGCTGATCTGGAGGAATACCTTC 105431 Query 82712 CTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGT 82771 ||||||||||| || |||||||| ||||| || || ||| ||||| ||||| | || Sbjct 105430 TTTATCTTGAATTTTAGCTTTTACGTTTTCGATAGTGTCAGATGGTTCCACTTCAAGTGT 105371 Query 82772 TATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||| || || ||||| | || || || || || ||||| Sbjct 105370 TATTGTTTTTCCTGTAAGTGTTTTGACGAAAATTTGCAT 105332 >seq9175 Length=65522 Score = 183 bits (202), Expect = 6e-41 Identities = 178/229 (78%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||||| | ||| || || | || || || ||||||||||| || || || |||| Sbjct 23108 TACCTCCTCGGAGACGGAGTACAAGATGGAGTGTTGATTCTTTCTGAATGTTGTAGTCAG 23167 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 |||| ||||||| ||||| |||||||||||||||||||| | ||| ||||| ||||| | Sbjct 23168 ATAGTGTTCTACCATCTTCAAGTTGTTTTCCAGCAAAGATCAATCTCTGTTGGTCTGGTG 23227 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||| || || || || || || ||||| ||||| ||||| ||||| ||||| | Sbjct 23228 GAATTCCCTCTTTGTCCTGGATTTTAGCTTTGACATTCTCAATTGTATCTGATGGTTCAA 23287 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| | ||| || |||||||| ||||| || || || || || ||||| Sbjct 23288 CTTCTAGAGTGATGGTCTTGCCAGTCAAAGTTTTGACGAAGATTTGCAT 23336 Score = 179 bits (198), Expect = 7e-40 Identities = 177/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||||| | ||| || || | || || || ||||||||||| ||||| || |||| Sbjct 22880 TACCTCCTCGGAGACGGAGTACAAGATGGAGTGTTGATTCTTTCTGAATATTGTAGTCAG 22939 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 |||| ||||||| ||||| ||||||||||| |||||||| | ||| ||||| ||||| | Sbjct 22940 ATAGTGTTCTACCATCTTCAAGTTGTTTTCCGGCAAAGATCAATCTCTGTTGGTCTGGTG 22999 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||| || || || || || || ||||| ||||| ||||| ||||| ||||| | Sbjct 23000 GAATTCCCTCTTTGTCCTGGATTTTAGCTTTGACATTCTCAATTGTATCTGATGGTTCAA 23059 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| | || || |||||||| ||||| || || || || || ||||| Sbjct 23060 CTTCTAGCGTGATGGTCTTGCCAGTCAATGTTTTGACGAAGATTTGCAT 23108 Score = 178 bits (196), Expect = 3e-39 Identities = 169/216 (78%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||||| ||||| || || || ||||||||||| || || || || || || ||||||| Sbjct 22665 ACGCAATACTAAATGGAGTGTGGATTCTTTCTGAATGTTGTAGTCGGACAGTGTTCTACC 22724 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| |||||||||||||||||||| | ||| ||||| ||||| || ||||| || || Sbjct 22725 ATCTTCAAGTTGTTTTCCAGCAAAGATCAATCTCTGTTGGTCTGGTGGAATTCCCTCTTT 22784 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 || || || || ||||| ||||||||||| ||||| ||||| ||||| | ||| || Sbjct 22785 GTCCTGGATTTTAGCTTTGACATTTTCAATTGTATCTGATGGTTCAACTTCTAGAGTGAT 22844 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || ||||| || || ||||| || ||||| Sbjct 22845 GGTCTTACCAGTCAAAGTTTTGACAAAGATTTGCAT 22880 >seq1561 Length=162734 Score = 114 bits (126), Expect = 3e-20 Identities = 127/167 (76%), Gaps = 2/167 (1%) Strand=Plus/Minus Query 144105 GTAAGAGCCTGGGATATAAATAAACCTCTTATTTTTTGCCCC-GCTATGAATACCCTTAT 144163 |||||||| |||||| |||| | ||| ||||| |||||||| |||||||||||| ||| Sbjct 22269 GTAAGAGCGTGGGATTTAAAGAGACCA-TTATTATTTGCCCCTGCTATGAATACCTATAT 22211 Query 144164 GTGGGAACATCCTATTACAGAAAAACATATAGATACTTTAAAACATATGGGTTTCATAGA 144223 |||||||||||| | |||| | ||| ||||| || || ||| | |||| | || ||| Sbjct 22210 GTGGGAACATCCACTGACAGGCAGACAGATAGAGACATTGAAAAGTTTGGGGTACAAAGA 22151 Query 144224 AATAGAATGTATAGaaaaaaaaCTAGCCTGTGGAGACGTAGGAAATG 144270 ||| ||||||| || ||| |||| ||||| || | || |||| Sbjct 22150 AATTCCATGTATAAGGAAGAAATTAGCATGTGGTGATGATGGTAATG 22104 >seq39591 Length=213653 Score = 93.3 bits (102), Expect = 8e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||||||||| | || || | || || |||||||||||||| || |||||||| || Sbjct 29204 CCTCCTCTCAATCTGAGGACGAGATGAAGGGTAGATTCTTTCTGGATGTTATAATCGGAC 29145 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | || || || || | ||||| ||||||||||| | |||||| |||||||| || Sbjct 29144 AATGTCCTTCCATCCTCCAACTGTTTACCAGCAAAGATCAATCTTTGCTGATCTGGGGGA 29085 Query 82704 ATTCCT 82709 || ||| Sbjct 29084 ATACCT 29079 >seq63802 Length=43549 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 82707 CCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCC 82766 |||||||| |||||||| ||||| || ||||||||||| || ||| || || || || Sbjct 12690 CCTTCCTTGTCTTGAATTTTTGCCTTGACATTTTCAATGGTGTCAGATGGCTCCACCTCT 12631 Query 82767 AAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || || ||||| || ||||| ||||| ||||| |||||||| Sbjct 12630 AGGGTAATGGTCTTCCCCGTCAATGTCTTCACAAAGATCTGCAT 12587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 980889096940247