Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Modiolus_20philippinarum_20[genbank_20GCA_5F002080025.1_202017-04- 05] 74,573 sequences; 2,629,556,424 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq35982 111 1e-19 seq9175 84.2 1e-11 >seq35982 Length=112201 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| |||||||| | || |||||||| || || |||||| || ||||||||||| || Sbjct 105331 ACCTCCTCTCAATCTCAAGACCAAATGAAGTGTCGACTCTTTCTGGATGTTGTAATCTGA 105272 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||| || | || || |||||||| || ||||| || | ||| ||||||||| | || Sbjct 105271 CAATGTACGACCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGAGG 105212 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||| || || || | || || | || | ||||| || ||||| Sbjct 105211 AATACCTTCTTTATCTTGGATCTT-AGCTTTTACGTTTTCGATAGTGTCTGATGGTTCCA 105153 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| || || ||||| || || | ||||| || || || |||||| Sbjct 105152 CTTCAAGTGTTATTGTTTTTCCGGTAAGTGTTTTGACGAAAATTTGCATA 105103 Score = 105 bits (116), Expect = 4e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||||||||| ||||| ||||| || || |||||| || |||||||| || || Sbjct 105904 CCTCCTCTCAAACGCAACACTAAATGAAGGGTTGACTCTTTCTGGATGTTGTAGTCTGAC 105845 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | ||| || | || || |||||||| || ||||| || | ||| ||||||||| | || Sbjct 105844 AATGTACGACCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGAGGA 105785 Query 33643 ACACCTTCTTTGTCGGCAATTTT 33665 | ||||||||| || |||||| Sbjct 105784 ATACCTTCTTTATCTTGAATTTT 105762 >seq9175 Length=65522 Score = 84.2 bits (92), Expect = 1e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 ||||| || || ||||| || || ||||| | | || || | ||||||||||||||| Sbjct 22918 TCTTTCTGAATATTGTAGTCAGATAGTGTTCTACCATCTTCAAGTTGTTTTCCGGCAAAG 22977 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 ||||| | ||| || ||| | || | || |||||||| ||||| | || |||| Sbjct 22978 ATCAATCTCTGTTGGTCTGGTGGAATTCCCTCTTTGTCCTGGATTTT-AGCTTTGACATT 23036 Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 || | || || || ||| || || | |||||| || || || || || ||||| || Sbjct 23037 CTCAATTGTATCTGATGGTTCAACTTCTAGCGTGATGGTCTTGCCAGTCAATGTTTTGAC 23096 Query 33738 AAAGATCTGCATA 33750 ||||| |||||| Sbjct 23097 GAAGATTTGCATA 23109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328405254596160