Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Modiolus_20philippinarum_20[genbank_20GCA_5F002080025.1_202017-04- 05] 74,573 sequences; 2,629,556,424 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq35982 132 1e-25 seq39591 93.3 1e-13 >seq35982 Length=112201 Score = 132 bits (146), Expect = 1e-25 Identities = 155/208 (75%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 206179 TTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237 ||||| |||||| | ||||||||||| || ||| ||||||||||| |||||||| | Sbjct 104428 TTTTGTCAAAACTTTGACAGGAAAAACAATTACTCTGGAAGTGGAACCATCTGACACTAT 104487 Query 206238 CGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACT 206297 |||| ||||| ||||| ||||| |||||||| ||| || || ||| | || Sbjct 104488 CGAAAACGTAAAAGCTAAGATCCAAGATAAAGAAGGTATTCCTCCAGATCAGCAACGTCT 104547 Query 206298 TATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAA 206357 |||||| || || || || || |||||||| | || ||| | || |||||| | ||||| Sbjct 104548 TATCTTTGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCAGACTACAACATTCAGAA 104607 Query 206358 AGAGTCTACTCTTCACCTTGTTTTGAGA 206385 |||||| || ||||| | || |||||| Sbjct 104608 AGAGTCAACACTTCATTTGGTCTTGAGA 104635 Score = 129 bits (142), Expect = 1e-24 Identities = 152/203 (75%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 |||||| || || |||||||| || || | ||||||||| |||||||| ||||| Sbjct 104890 CAAAACACTTACTGGAAAAACAATAACACTTGAAGTGGAACCATCTGACACTATCGAAAA 104949 Query 206244 AGTAAA-GCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCT 206302 ||||| || ||| |||||||| |||||||| ||| || || ||| | ||||||| Sbjct 104950 CGTAAAAGCTAAA-ATTCAAGATAAAGAAGGTATTCCTCCAGATCAGCAACGTCTTATCT 105008 Query 206303 TCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGT 206362 | || || || || || |||||||| | || ||| | ||||| ||| |||||||||||| Sbjct 105009 TTGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCGGATTATAACATCCAGAAAGAGT 105068 Query 206363 CTACTCTTCACCTTGTTTTGAGA 206385 | || ||||| | || |||||| Sbjct 105069 CCACGCTTCATTTGGTCTTGAGA 105091 Score = 125 bits (138), Expect = 2e-23 Identities = 149/202 (74%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 |||||| || || |||||||| || || | ||||||||| || ||||| ||||| Sbjct 105118 CAAAACACTTACCGGAAAAACAATAACACTTGAAGTGGAACCATCAGACACTATCGAAAA 105177 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 ||||| ||||| ||||| |||||||| ||| || || ||| | |||||||| Sbjct 105178 CGTAAAAGCTAAGATCCAAGATAAAGAAGGTATTCCTCCAGATCAGCAACGTCTTATCTT 105237 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || || || || || |||||||| | || ||| | ||||||||| ||||||||||||| Sbjct 105238 TGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCAGATTACAACATCCAGAAAGAGTC 105297 Query 206364 TACTCTTCACCTTGTTTTGAGA 206385 || ||||| | || |||||| Sbjct 105298 GACACTTCATTTGGTCTTGAGA 105319 Score = 123 bits (136), Expect = 6e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||||||| ||||| || ||||| ||||| ||||| | ||||| ||| ||| ||| Sbjct 104195 CAGATATTTGTGAAAACACTGACAGGGAAAACTATCACCCTTGAAGTAGAACCTTCAGAC 104254 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || ||||| |||||| || || || || ||||| |||||| || || ||| Sbjct 104255 ACTATCGAAAATGTAAAGGCCAAAATCCAGGATAAAGAGGGAATTCCTCCAGATCAGCAA 104314 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | |||||||| || || || || || |||||||| | || ||| | || |||||| || Sbjct 104315 CGTCTTATCTTTGCTGGCAAACAATTAGAAGATGGTCGTACATTGTCAGACTACAACATC 104374 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGA 206385 ||||||||||| || ||||| | || || ||| Sbjct 104375 CAGAAAGAGTCAACACTTCATTTGGTCTTAAGA 104407 Score = 122 bits (134), Expect = 2e-22 Identities = 148/202 (73%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 |||||| || || |||||||| || || | ||||||||| || ||||| ||||| Sbjct 104662 CAAAACACTTACTGGAAAAACAATAACACTTGAAGTGGAACCATCAGACACTATCGAAAA 104721 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 ||||| ||||| ||||| |||||||| ||| || || ||| | |||||||| Sbjct 104722 CGTAAAAGCCAAGATCCAAGATAAAGAAGGTATTCCTCCAGATCAGCAACGTCTTATCTT 104781 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || || || || || |||||||| | || ||| | || |||||| ||||||||||||| Sbjct 104782 TGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCGGACTACAACATCCAGAAAGAGTC 104841 Query 206364 TACTCTTCACCTTGTTTTGAGA 206385 || ||||| | || |||||| Sbjct 104842 CACACTTCATTTGGTCTTGAGA 104863 Score = 96.9 bits (106), Expect = 8e-15 Identities = 122/165 (74%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 |||||| || ||||||||||| || || | ||||||||| |||||||| ||||| Sbjct 105346 CAAAACACTTACAGGAAAAACAATAACACTTGAAGTGGAACCATCTGACACTATCGAAAA 105405 Query 206244 AGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCT 206302 || ||||| ||| |||||||| |||||||| ||| || || ||| | ||||||| Sbjct 105406 CGTAAAAGCTAAA-ATTCAAGATAAAGAAGGTATTCCTCCAGATCAGCAACGTCTTATCT 105464 Query 206303 TCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACA 206347 | || || || || || |||||||| | || ||| | || |||| Sbjct 105465 TTGCTGGGAAACAATTAGAAGATGGTCGTACGTTGTCAGACTACA 105509 Score = 91.5 bits (100), Expect = 3e-13 Identities = 108/144 (75%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 206230 GACACAGTCGAATCAGTAAA-GCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGC 206288 ||||| ||||| ||||| || ||| |||||||| |||||||| ||| || || Sbjct 105738 GACACTATCGAAAACGTAAAAGCTAAA-ATTCAAGATAAAGAAGGTATTCCTCCAGATCA 105796 Query 206289 TCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAA 206348 ||| | |||||||| || || || || || |||||||| | || ||| | || ||||| Sbjct 105797 GCAACGTCTTATCTTTGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCAGACTACAA 105856 Query 206349 CGTCCAGAAAGAGTCTACTCTTCA 206372 | ||||||||||||| || ||||| Sbjct 105857 CATCCAGAAAGAGTCAACCCTTCA 105880 >seq39591 Length=213653 Score = 93.3 bits (102), Expect = 1e-13 Identities = 74/89 (83%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 206290 CAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAAC 206349 |||||| | ||||| || || || |||||||| ||||||||||| ||| ||||||| ||| Sbjct 29098 CAAAGATTGATCTTTGCTGGTAAACAGTTGGAGGATGGAAGGACATTGTCCGATTATAAC 29157 Query 206350 GTCCAGAAAGAGTCTACTCTTCACCTTGT 206378 |||||||||| ||||| ||||| || || Sbjct 29158 ATCCAGAAAGAATCTACCCTTCATCTCGT 29186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1180691609742733