Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Modiolus_20philippinarum_20[genbank_20GCA_5F002080025.1_202017-04- 05] 74,573 sequences; 2,629,556,424 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq35982 129 6e-25 seq9175 91.5 1e-13 >seq35982 Length=112201 Score = 129 bits (142), Expect = 6e-25 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 ||| | ||| |||||||| | |||||||||| |||||||||||||| || ||||| Sbjct 104638 CAATCTCAAGACCAAATGAAGTGTTGACTCTTTCTGAATGTTGTAGTCTGACAATGTACG 104579 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 |||||| | |||||||| | | |||| ||||| || ||||||||||| || ||||| Sbjct 104578 ACCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGAGGAATACCTTC 104519 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 |||||| || || ||| | | ||| | ||| || | || |||||||| | || Sbjct 104518 TTTATCTTGGATCTTAGCTTTTACGTTTTCGATAGTGTCAGATGGTTCCACTTCCAGAGT 104459 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | ||||| || |||| |||||| | ||||| ||||| Sbjct 104458 AATTGTTTTTCCTGTCAAAGTTTTGACAAAAATTTGCAT 104420 Score = 125 bits (138), Expect = 7e-24 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 ||| | ||| |||||||| | | |||||||| || ||||||||||| || ||||| Sbjct 104866 CAATCTCAAGACCAAATGAAGTGTGGACTCTTTCTGGATGTTGTAGTCCGACAATGTACG 104807 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 |||||| | |||||||| | | |||| ||||| || ||||||||||| || ||||| Sbjct 104806 ACCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGAGGAATACCTTC 104747 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 |||||| || || ||| | | ||| | ||| || | || |||||||| | || Sbjct 104746 TTTATCTTGGATCTTGGCTTTTACGTTTTCGATAGTGTCTGATGGTTCCACTTCAAGTGT 104687 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | ||||| ||||| || ||||| | |||||| ||||| Sbjct 104686 TATTGTTTTTCCAGTAAGTGTTTTGACGAAAATTTGCAT 104648 Score = 125 bits (138), Expect = 7e-24 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 ||| | ||| |||||||| | | |||||||| || ||||| || || || ||||| Sbjct 105094 CAATCTCAAGACCAAATGAAGCGTGGACTCTTTCTGGATGTTATAATCCGACAATGTACG 105035 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 |||||| | |||||||| | | |||| ||||| || ||||||||||| || ||||| Sbjct 105034 ACCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGAGGAATACCTTC 104975 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 |||||| |||||| ||| | | ||| | ||| || | || |||||||| | || Sbjct 104974 TTTATCTTGAATTTTAGCTTTTACGTTTTCGATAGTGTCAGATGGTTCCACTTCAAGTGT 104915 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | ||||| ||||| || ||||| | |||||| ||||| Sbjct 104914 TATTGTTTTTCCAGTAAGTGTTTTGACGAAAATTTGCAT 104876 Score = 116 bits (128), Expect = 4e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 ||| | ||| |||||||| | | |||||||| || |||||||| || || ||||| Sbjct 105322 CAATCTCAAGACCAAATGAAGTGTCGACTCTTTCTGGATGTTGTAATCTGACAATGTACG 105263 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 |||||| | |||||||| | | |||| ||||| || ||||||||||| || ||||| Sbjct 105262 ACCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGAGGAATACCTTC 105203 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 |||||| || || ||| | | ||| | ||| || | || |||||||| | || Sbjct 105202 TTTATCTTGGATCTTAGCTTTTACGTTTTCGATAGTGTCTGATGGTTCCACTTCAAGTGT 105143 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | ||||| || || || ||||| | |||||| ||||| Sbjct 105142 TATTGTTTTTCCGGTAAGTGTTTTGACGAAAATTTGCAT 105104 Score = 109 bits (120), Expect = 5e-19 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 ||| ||||| || ||||| | | |||||||||| || ||||||||||| || ||||| Sbjct 105896 CAAACGCAACACTAAATGAAGGGTTGACTCTTTCTGGATGTTGTAGTCTGACAATGTACG 105837 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 |||||| | |||||||| | | |||| ||||| || ||||||||||| || ||||| Sbjct 105836 ACCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGAGGAATACCTTC 105777 Query 132025 TTTATCGGTAATTTT 132039 |||||| |||||| Sbjct 105776 TTTATCTTGAATTTT 105762 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 131912 AAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCT 131971 || |||||||| | |||||||||| || ||||||||||| || ||||| |||| Sbjct 104403 AAGACCAAATGAAGTGTTGACTCTTTCTGGATGTTGTAGTCTGACAATGTACGACCATCT 104344 Query 131972 TCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCG 132031 || | ||||| || | | |||| ||||| || ||||||||||| || || |||||||| Sbjct 104343 TCTAATTGTTTGCCAGCAAAGATAAGACGTTGCTGATCTGGAGGAATTCCCTCTTTATCC 104284 Query 132032 GTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTT 132091 ||||| || | | ||| | ||| || | || || ||||| | || | ||| Sbjct 104283 TGGATTTTGGCCTTTACATTTTCGATAGTGTCTGAAGGTTCTACTTCAAGGGTGATAGTT 104224 Query 132092 TTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || ||||| ||||| | || |||||||| Sbjct 104223 TTCCCTGTCAGTGTTTTCACAAATATCTGCAT 104192 Score = 96.9 bits (106), Expect = 3e-15 Identities = 128/178 (72%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 131946 TGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTT 132005 ||||||| || ||||| |||||| | ||||| || | | |||| ||||| || | Sbjct 105509 TGTAGTCTGACAACGTACGACCATCTTCTAATTGTTTCCCAGCAAAGATAAGACGTTGCT 105450 Query 132006 GATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGG 132065 |||||||||| || ||||||||||| |||||| ||| | | ||| | ||| || | Sbjct 105449 GATCTGGAGGAATACCTTCTTTATCTTGAATTTTAGCTTTTACGTTTTCGATAGTGTCAG 105390 Query 132066 TCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || |||||||| | || | ||||| || || || ||||| | |||||| ||||| Sbjct 105389 ATGGTTCCACTTCAAGTGTTATTGTTTTTCCTGTAAGTGTTTTGACGAAAATTTGCAT 105332 >seq9175 Length=65522 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| || ||||| | | || ||||| ||||||||||||||| || || | | Sbjct 22666 CGCAATACTAAATGGAGTGTGGATTCTTTCTGAATGTTGTAGTCGGACAGTGTTCTACCA 22725 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| || ||||| || | | |||| | | |||||| ||||| || || || ||||| Sbjct 22726 TCTTCAAGTTGTTTTCCAGCAAAGATCAATCTCTGTTGGTCTGGTGGAATTCCCTCTTTG 22785 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||||| ||| | | ||| | ||||| | || || ||||| | || | Sbjct 22786 TCCTGGATTTTAGCTTTGACATTTTCAATTGTATCTGATGGTTCAACTTCTAGAGTGATG 22845 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || |||||||||| |||||| | || || ||||| Sbjct 22846 GTCTTACCAGTCAAAGTTTTGACAAAGATTTGCAT 22880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476166920912280