Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Modiolus_20philippinarum_20[genbank_20GCA_5F002080025.1_202017-04- 05] 74,573 sequences; 2,629,556,424 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq35982 127 2e-24 seq9175 107 2e-18 >seq35982 Length=112201 Score = 127 bits (140), Expect = 2e-24 Identities = 168/231 (73%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| |||||| | || || ||| | ||||| | ||||| ||| | Sbjct 104192 ATGCAGATATTTGTGAAAACACTGACAGGGAAAACTATCACCCTTGAAGTAGAACCTTCA 104251 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || |||||||| | ||||| ||||| ||||||||||| || || || |||||| Sbjct 104252 GACACTATCGAAAATGTAAAGGCCAAAATCCAGGATAAAGAGGGAATTCCTCCAGATCAG 104311 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG--AAATGTCAGCGATTACA 25352 ||| | || || | | ||||||||| | ||||||| | | | ||||| || |||| Sbjct 104312 CAACGTCTTATCTTTGCTGGCAAACAATTAGAAGATGGTCGTACATTGTCA--GACTACA 104369 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 | || || ||||| || || ||||||| || ||||||||||||||||||| Sbjct 104370 ACATCCAGAAAGAGTCAACACTTCATTTGGTCTTAAGATTGAGAGGAGGAA 104420 Score = 127 bits (140), Expect = 2e-24 Identities = 169/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| ||||| || || |||||| | || || | ||||| ||| ||| | Sbjct 104420 ATGCAAATTTTTGTCAAAACTTTGACAGGAAAAACAATTACTCTGGAAGTGGAA-CCATC 104478 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || |||||||| | |||||| || || |||||||| ||||| || || ||||| Sbjct 104479 TGACACTATCGAAAACGTAAAAGCTAAGATCCAAGATAAAGAAGGTATTCCTCCAGATCA 104538 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTAC 25351 |||| | || || | | || |||||| | ||||||| | | | |||||| | ||| Sbjct 104539 GCAACGTCTTATCTTTGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCAG--ACTAC 104596 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || ||||| ||||| || || ||||||| || || |||||||||||||| Sbjct 104597 AACATTCAGAAAGAGTCAACACTTCATTTGGTCTTGAGATTGAGAGGAGG 104646 Score = 127 bits (140), Expect = 2e-24 Identities = 169/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || |||||| | || |||||| | || || | ||||| ||| ||| | Sbjct 104876 ATGCAAATTTTCGTCAAAACACTTACTGGAAAAACAATAACACTTGAAGTGGAA-CCATC 104934 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || |||||||| | |||||| |||||| |||||||| ||||| || || ||||| Sbjct 104935 TGACACTATCGAAAACGTAAAAGCTAAAATTCAAGATAAAGAAGGTATTCCTCCAGATCA 104994 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTAC 25351 |||| | || || | | || |||||| | ||||||| | | | |||| | |||| Sbjct 104995 GCAACGTCTTATCTTTGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCGG--ATTAT 105052 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || || || ||||| ||||| ||||||| || || |||||||||||||| Sbjct 105053 AACATCCAGAAAGAGTCCACGCTTCATTTGGTCTTGAGATTGAGAGGAGG 105102 Score = 127 bits (140), Expect = 2e-24 Identities = 169/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || |||||| | ||||||||| | || || | ||||| ||| ||| | Sbjct 105104 ATGCAAATTTTCGTCAAAACACTTACCGGAAAAACAATAACACTTGAAGTGGAA-CCATC 105162 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || |||||||| | |||||| || || |||||||| ||||| || || ||||| Sbjct 105163 AGACACTATCGAAAACGTAAAAGCTAAGATCCAAGATAAAGAAGGTATTCCTCCAGATCA 105222 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTAC 25351 |||| | || || | | || |||||| | ||||||| | | | |||||| ||||| Sbjct 105223 GCAACGTCTTATCTTTGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCAG--ATTAC 105280 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || || || ||||| || || ||||||| || || |||||||||||||| Sbjct 105281 AACATCCAGAAAGAGTCGACACTTCATTTGGTCTTGAGATTGAGAGGAGG 105330 Score = 118 bits (130), Expect = 9e-22 Identities = 167/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || |||||| | || |||||| | || || | ||||| ||| ||| | Sbjct 104648 ATGCAAATTTTCGTCAAAACACTTACTGGAAAAACAATAACACTTGAAGTGGAA-CCATC 104706 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || |||||||| | |||||| || || |||||||| ||||| || || ||||| Sbjct 104707 AGACACTATCGAAAACGTAAAAGCCAAGATCCAAGATAAAGAAGGTATTCCTCCAGATCA 104766 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTAC 25351 |||| | || || | | || |||||| | ||||||| | | | |||| | | ||| Sbjct 104767 GCAACGTCTTATCTTTGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCGG--ACTAC 104824 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || || || ||||| ||||| ||||||| || || |||||||||||||| Sbjct 104825 AACATCCAGAAAGAGTCCACACTTCATTTGGTCTTGAGATTGAGAGGAGG 104874 Score = 114 bits (126), Expect = 1e-20 Identities = 132/176 (75%), Gaps = 4/176 (2%) Strand=Plus/Plus Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || |||||||| | |||||| |||||| |||||||| ||||| || || |||||| Sbjct 105738 GACACTATCGAAAACGTAAAAGCTAAAATTCAAGATAAAGAAGGTATTCCTCCAGATCAG 105797 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTACA 25352 ||| | || || | | || |||||| | ||||||| | | | |||||| | |||| Sbjct 105798 CAACGTCTTATCTTTGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCAG--ACTACA 105855 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAAAATGA 25408 | || || ||||| || ||| ||||||||||||| | |||||||||||| ||||| Sbjct 105856 ACATCCAGAAAGAGTCAACCCTTCATTTAGTGTTGCGTTTGAGAGGAGGACAATGA 105911 >seq9175 Length=65522 Score = 107 bits (118), Expect = 2e-18 Identities = 170/239 (71%), Gaps = 6/239 (3%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| ||||| || || || || | ||||| | ||||| ||| ||| | Sbjct 22880 ATGCAAATCTTTGTCAAAACTTTGACTGGTAAGACCATCACTCTAGAAGTTGAA-CCATC 22822 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||||| || || | || ||| ||||| || |||||||| || || || || || Sbjct 22821 AGATACAATTGAAAATGTCAAAGCTAAAATCCAGGACAAAGAGGGAATTCCACCAGACCA 22762 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTAC 25351 || ||| | || | | || |||||||| ||||||| ||||| |||| ||| ||| Sbjct 22761 ACAGAGATTGATCTTTGCTGGAAAACAACTTGAAGATGGTAGAACACTGTC--CGACTAC 22704 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAAAATGATC 25410 || ||||| ||||||||||| | |||||||| || | | | || ||||| ||||| Sbjct 22703 AACATTCAGAAAGAATCCACACTCCATTTAGTATTGCGTCTACGTGGTGGAAATTGATC 22645 Score = 102 bits (112), Expect = 7e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || |||||||| || || || | |||||| | ||||| ||| ||| | Sbjct 23108 ATGCAAATCTTCGTCAAAACATTGACTGGCAAGACCATCACGCTAGAAGTTGAA-CCATC 23050 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||||| || ||| | || ||| ||||| || |||||||| || || || || || Sbjct 23049 AGATACAATTGAGAATGTCAAAGCTAAAATCCAGGACAAAGAGGGAATTCCACCAGACCA 22990 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 || ||| | || | | ||| |||||||| ||||||| ||||| | || ||||| Sbjct 22989 ACAGAGATTGATCTTTGCCGGAAAACAACTTGAAGATGGTAGAACACTATCTGACTACAA 22930 Query 25354 TATTCAAAAAGAATCCAC 25371 |||||| |||||||| || Sbjct 22929 TATTCAGAAAGAATCAAC 22912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444679499691360