Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Modiolus_20philippinarum_20[genbank_20GCA_5F002080025.1_202017-04- 05] 74,573 sequences; 2,629,556,424 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq9175 118 9e-22 seq35982 105 5e-18 >seq9175 Length=65522 Score = 118 bits (130), Expect = 9e-22 Identities = 167/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||| ||||| ||||| |||||||| |||||||| || | ||| ||||| Sbjct 22880 ATGCAAATCTTTGTCAAAACTTTGACTGGTAAGACCATCACTCTAGAAGTTGAACCATCA 22821 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| | ||| | || ||| ||||| |||||||| || | || || ||| Sbjct 22820 GATACAATTGAAAATGTCAAAGCTAAAATCCAGGACAAAGAGGGAATTCCACCAGACCAA 22761 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || || | || | ||| || |||||| | |||||| || ||| || ||| |||||| Sbjct 22760 CAGAGATTGATCTTTGCTGGAAAACAACTTGAAGATGGTAGAACACTGTCCGACTACAAC 22701 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGATAATGAT 106494 || || |||||||| ||||| |||||||||||| | |||| || ||| | |||| Sbjct 22700 ATTCAGAAAGAATCCACACTCCATTTAGTATTGCGTCTACGTGGTGGAAATTGAT 22646 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||| || || ||||||||||||||||||||||| || | ||| ||||| Sbjct 23108 ATGCAAATCTTCGTCAAAACATTGACTGGCAAGACCATCACGCTAGAAGTTGAACCATCA 23049 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| | ||| | || ||| ||||| |||||||| || | || || ||| Sbjct 23048 GATACAATTGAGAATGTCAAAGCTAAAATCCAGGACAAAGAGGGAATTCCACCAGACCAA 22989 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || || | || | ||| || |||||| | |||||| || ||| | || ||||| Sbjct 22988 CAGAGATTGATCTTTGCCGGAAAACAACTTGAAGATGGTAGAACACTATCTGACTACAAT 22929 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 || || |||||||| ||||| ||| | ||| | | | |||||||| Sbjct 22928 ATTCAGAAAGAATCAACACTCCATCTTGTACTCCGTCTCCGAGGAGG 22882 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||| || || ||||| ||||||||||||||||| || | ||| ||||| Sbjct 23336 ATGCAAATCTTCGTCAAAACTTTGACTGGCAAGACCATCACTCTAGAAGTTGAACCATCA 23277 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| | ||| | || ||| ||||| |||||||| || | || || ||| Sbjct 23276 GATACAATTGAGAATGTCAAAGCTAAAATCCAGGACAAAGAGGGAATTCCACCAGACCAA 23217 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || || | || | ||| || |||||| | |||||| || ||| | || |||||| Sbjct 23216 CAGAGATTGATCTTTGCTGGAAAACAACTTGAAGATGGTAGAACACTATCTGACTACAAC 23157 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 || || |||||||| ||||| ||| | ||| | | | |||||||| Sbjct 23156 ATTCAGAAAGAATCAACACTCCATCTTGTACTCCGTCTCCGAGGAGG 23110 >seq35982 Length=112201 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 ||||||||||||||| ||||| ||||| || || || ||||| ||||| ||||| Sbjct 104419 AATGCAAATTTTTGTCAAAACTTTGACAGGAAAAACAATTACTCTGGAAGTGGAACCATC 104478 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 || || | | | || ||| || || || |||||||| | || ||||| Sbjct 104479 TGACACTATCGAAAACGTAAAAGCTAAGATCCAAGATAAAGAAGGTATTCCTCCAGATCA 104538 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 ||| | ||||| | ||| || ||||||||||||||| | || || || ||||| Sbjct 104539 GCAACGTCTTATCTTTGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCAGACTACAA 104598 Query 106439 CATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 ||| || ||||| || ||||| ||||| || ||||| || ||||||| Sbjct 104599 CATTCAGAAAGAGTCAACACTTCATTTGGTCTTGAGATTGAGAGGAGG 104646 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||||||||| || |||||| | ||||| || || || || | ||| ||||| Sbjct 104876 ATGCAAATTTTCGTCAAAACACTTACTGGAAAAACAATAACACTTGAAGTGGAACCATCT 104935 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || || | | | || ||| |||||| || |||||||| | || ||||| Sbjct 104936 GACACTATCGAAAACGTAAAAGCTAAAATTCAAGATAAAGAAGGTATTCCTCCAGATCAG 104995 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||| | ||||| | ||| || ||||||||||||||| | || || ||||| ||| Sbjct 104996 CAACGTCTTATCTTTGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCGGATTATAAC 105055 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 || || ||||| || || || ||||| || ||||| || ||||||| Sbjct 105056 ATCCAGAAAGAGTCCACGCTTCATTTGGTCTTGAGATTGAGAGGAGG 105102 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||||||||| || |||||| | ||||| || || || || | ||| ||||| Sbjct 104648 ATGCAAATTTTCGTCAAAACACTTACTGGAAAAACAATAACACTTGAAGTGGAACCATCA 104707 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || || | | | || ||| || || || |||||||| | || ||||| Sbjct 104708 GACACTATCGAAAACGTAAAAGCCAAGATCCAAGATAAAGAAGGTATTCCTCCAGATCAG 104767 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||| | ||||| | ||| || ||||||||||||||| | || || || |||||| Sbjct 104768 CAACGTCTTATCTTTGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCGGACTACAAC 104827 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 || || ||||| || ||||| ||||| || ||||| || ||||||| Sbjct 104828 ATCCAGAAAGAGTCCACACTTCATTTGGTCTTGAGATTGAGAGGAGG 104874 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||||||||| || |||||| | || || || || || || | ||| ||||| Sbjct 105104 ATGCAAATTTTCGTCAAAACACTTACCGGAAAAACAATAACACTTGAAGTGGAACCATCA 105163 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || || | | | || ||| || || || |||||||| | || ||||| Sbjct 105164 GACACTATCGAAAACGTAAAAGCTAAGATCCAAGATAAAGAAGGTATTCCTCCAGATCAG 105223 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||| | ||||| | ||| || ||||||||||||||| | || || ||||||||| Sbjct 105224 CAACGTCTTATCTTTGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCAGATTACAAC 105283 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 || || ||||| || ||||| ||||| || ||||| || ||||||| Sbjct 105284 ATCCAGAAAGAGTCGACACTTCATTTGGTCTTGAGATTGAGAGGAGG 105330 Score = 86.0 bits (94), Expect = 5e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 106344 AAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAACAAAGGCTTATTTATGCGGGCAAA 106403 |||||| || |||||||| | || ||||| ||| | ||||| | ||| || ||| Sbjct 105762 AAAATTCAAGATAAAGAAGGTATTCCTCCAGATCAGCAACGTCTTATCTTTGCTGGTAAA 105821 Query 106404 CAATTAGAAGATTCTAAAACTATGGGCGATTACAACATACAAAAAGAATCTACACTACAT 106463 |||||||||||| | || || || |||||||| || ||||| || || || ||| Sbjct 105822 CAATTAGAAGATGGTCGTACATTGTCAGACTACAACATCCAGAAAGAGTCAACCCTTCAT 105881 Query 106464 TTAGTATTGAGGTTACGAGGAGGATAATGA 106493 ||||| ||| | || |||||||| ||||| Sbjct 105882 TTAGTGTTGCGTTTGAGAGGAGGACAATGA 105911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 401963939348384