Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Modiolus_20philippinarum_20[genbank_20GCA_5F002080025.1_202017-04- 05] 74,573 sequences; 2,629,556,424 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq9175 105 6e-18 seq35982 91.5 1e-13 >seq9175 Length=65522 Score = 105 bits (116), Expect = 6e-18 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 35506 ATTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATC 35565 |||||||||||||| | ||| || ||||| | || || || ||||||||||| || Sbjct 22650 ATTTCCACCACGTAGACGCAATACTAAATGGAGTGTGGATTCTTTCTGAATGTTGTAGTC 22709 Query 35566 GGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGA 35625 || || |||| | || || || || || || ||||| ||||| | ||| ||||| | Sbjct 22710 GGACAGTGTTCTACCATCTTCAAGTTGTTTTCCAGCAAAGATCAATCTCTGTTGGTCTGG 22769 Query 35626 AGGAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATT 35684 |||| | ||| |||||| ||| ||| || || | | || | | || || | || Sbjct 22770 TGGAATTCCCTCTTTGTCCTGGAT-TTTAGCTTTGACATTTTCAATTGTATCTGATGGTT 22828 Query 35685 CCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | || || | ||||| || ||||| ||||||||||| ||||| || ||||| Sbjct 22829 CAACTTCTAGAGTGATGGTCTTACCAGTCAAAGTTTTGACAAAGATTTGCAT 22880 >seq35982 Length=112201 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 35519 AACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGC 35578 || ||||| |||||||| | || ||| || ||||||||||| || | ||| || || Sbjct 104637 AATCTCAAGACCAAATGAAGTGTTGACTCTTTCTGAATGTTGTAGTCTGACAATGTACGA 104578 Query 35579 TCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCC 35638 | || || | || ||||| ||||| || | || ||||| || | ||||| | || Sbjct 104577 CCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGAGGAATACCTTCT 104518 Query 35639 TTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTG 35698 || || |||||| || | || | | ||||| | |||||| |||| || Sbjct 104517 TTATCTTGGATCTTAGCTTTTACGTTTTCGATAGTGTCAGATGGTTCCACTTCCAGAGTA 104458 Query 35699 ATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 || ||||| || ||||||||||| ||||| || ||||||| Sbjct 104457 ATTGTTTTTCCTGTCAAAGTTTTGACAAAAATTTGCATTC 104418 Score = 89.7 bits (98), Expect = 5e-13 Identities = 161/234 (69%), Gaps = 1/234 (0%) Strand=Plus/Minus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||| || | || || || |||||||| | || ||| || || |||||||| || | Sbjct 104420 TTCCTCCTCTCAATCTTAAGACCAAATGAAGTGTTGACTCTTTCTGGATGTTGTAGTCTG 104361 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 ||| || || | || || | || || || ||||| || | || ||||| || | || Sbjct 104360 ACAATGTACGACCATCTTCTAATTGTTTGCCAGCAAAGATAAGACGTTGCTGATCTGGAG 104301 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCA 35687 ||| | ||| || ||| ||| || ||| | | || | | ||||| | ||| | Sbjct 104300 GAATTCCCTCTTTATCCTGGATTTTGGCCTTTACATTTTCGATAGTGTCTGAAGGTTCTA 104241 Query 35688 CCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTGT 35741 | || | ||||| ||||| || |||| ||||||||||||||||||| ||||| Sbjct 104240 CTTCAAGGGTGATAGTTTTCCCTGTCAGTGTTTTCACAAATATCTGCA-TCTGT 104188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450373387110840