Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Modiolus_20philippinarum_20[genbank_20GCA_5F002080025.1_202017-04- 05] 74,573 sequences; 2,629,556,424 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq35982 131 2e-25 seq9175 125 7e-24 >seq35982 Length=112201 Score = 131 bits (144), Expect = 2e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 |||||||| | || ||| || | || || || || || || |||||||||||||| | | Sbjct 104646 CCTCCTCTCAATCTCAAGACCAAATGAAGTGTTGACTCTTTCTGAATGTTGTAGTCTGAC 104587 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || | | || || || | ||||| || ||||| || | ||| |||||||| || || Sbjct 104586 AATG-TACGACCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGAGG 104528 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || |||||||| ||||| || || ||| || || | ||||| || | |||||| Sbjct 104527 AATACCTTCTTTATCTTGGATCTTAGCTTTTACGTTTTCGATAGTGTCAGATGGTTCCAC 104468 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || |||||||| ||||| || || |||||||| || |||||||||||| Sbjct 104467 TTCCAGAGTAATTGTTTTTCCTGTCAAAGTTTTGACAAAAATTTGCATT 104419 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 |||||||| | || ||| || | || |||||||| || || || ||||| || || | | Sbjct 105102 CCTCCTCTCAATCTCAAGACCAAATGAAGCGTGGACTCTTTCTGGATGTTATAATCCGAC 105043 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || | | || || || | ||||| || ||||| || | ||| |||||||| || || Sbjct 105042 AATG-TACGACCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGAGG 104984 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || |||||||| ||||||||||| ||| || || | ||||| || | |||||| Sbjct 104983 AATACCTTCTTTATCTTGAATTTTAGCTTTTACGTTTTCGATAGTGTCAGATGGTTCCAC 104924 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || ||||| || || | ||||| |||||||||||||| Sbjct 104923 TTCAAGTGTTATTGTTTTTCCAGTAAGTGTTTTGACGAAAATTTGCAT 104876 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 |||||||| | || ||| || | || || ||||| || || || ||||||||||| | | Sbjct 104874 CCTCCTCTCAATCTCAAGACCAAATGAAGTGTGGACTCTTTCTGGATGTTGTAGTCCGAC 104815 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || | | || || || | ||||| || ||||| || | ||| |||||||| || || Sbjct 104814 AATG-TACGACCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGAGG 104756 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || |||||||| ||||| || || ||| || || | ||||| || | |||||| Sbjct 104755 AATACCTTCTTTATCTTGGATCTTGGCTTTTACGTTTTCGATAGTGTCTGATGGTTCCAC 104696 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || ||||| || || | ||||| |||||||||||||| Sbjct 104695 TTCAAGTGTTATTGTTTTTCCAGTAAGTGTTTTGACGAAAATTTGCAT 104648 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 |||||||| | || ||| || | || || || || || || || |||||||| || | | Sbjct 105330 CCTCCTCTCAATCTCAAGACCAAATGAAGTGTCGACTCTTTCTGGATGTTGTAATCTGAC 105271 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || | | || || || | ||||| || ||||| || | ||| |||||||| || || Sbjct 105270 AATG-TACGACCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGAGG 105212 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || |||||||| ||||| || || ||| || || | ||||| || | |||||| Sbjct 105211 AATACCTTCTTTATCTTGGATCTTAGCTTTTACGTTTTCGATAGTGTCTGATGGTTCCAC 105152 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || ||||| ||||| | ||||| |||||||||||||| Sbjct 105151 TTCAAGTGTTATTGTTTTTCCGGTAAGTGTTTTGACGAAAATTTGCAT 105104 Score = 102 bits (112), Expect = 8e-17 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 134568 TGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATT 134627 ||||| || ||||| || | ||| |||||||| || || || |||||||| ||||||||| Sbjct 105477 TGTTTCCCAGCAAAGATAAGACGTTGCTGATCTGGAGGAATACCTTCTTTATCTTGAATT 105418 Query 134628 TTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCG 134687 || ||| || || | ||||| || | |||||| || || || || ||||| || Sbjct 105417 TTAGCTTTTACGTTTTCGATAGTGTCAGATGGTTCCACTTCAAGTGTTATTGTTTTTCCT 105358 Query 134688 GTTAAAGTTTTAACGAAAATTTGCAT 134713 || | ||||| |||||||||||||| Sbjct 105357 GTAAGTGTTTTGACGAAAATTTGCAT 105332 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-G 134543 |||||||||| | || || || | || || || || || || || ||||||||||| | Sbjct 104420 TTCCTCCTCTCAATCTTAAGACCAAATGAAGTGTTGACTCTTTCTGGATGTTGTAGTCTG 104361 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 ||| || || || || | |||||||| ||||| || | ||| |||||||| || Sbjct 104360 ACAA-TGTACGACCATCTTCTAATTGTTTGCCAGCAAAGATAAGACGTTGCTGATCTGGA 104302 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 || || || ||||| || || ||||| || || || | ||||| || | ||| Sbjct 104301 GGAATTCCCTCTTTATCCTGGATTTTGGCCTTTACATTTTCGATAGTGTCTGAAGGTTCT 104242 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || ||||| || || | ||||| || || || ||||| Sbjct 104241 ACTTCAAGGGTGATAGTTTTCCCTGTCAGTGTTTTCACAAATATCTGCAT 104192 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 134486 TCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GC 134544 ||||||||| | |||||||| | || || || || || || || ||||||||||| | Sbjct 105905 TCCTCCTCTCAAACGCAACACTAAATGAAGGGTTGACTCTTTCTGGATGTTGTAGTCTGA 105846 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 ||| | | || || || | ||||| || ||||| || | ||| |||||||| || | Sbjct 105845 CAATG-TACGACCATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGAG 105787 Query 134605 GTATGCCTTCTTTTTCTTGAATTTT 134629 | || |||||||| ||||||||||| Sbjct 105786 GAATACCTTCTTTATCTTGAATTTT 105762 >seq9175 Length=65522 Score = 125 bits (138), Expect = 7e-24 Identities = 168/232 (72%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 134484 TTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCG 134543 ||||| || | || ||||| || | || || |||||||| || ||||||||||||||| Sbjct 22651 TTTCCACCACGTAGACGCAATACTAAATGGAGTGTGGATTCTTTCTGAATGTTGTAGTCG 22710 Query 134544 CCAACGGTGT--GAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGG 134601 || |||| | || || || ||||| || ||||| ||||| | ||| || || | Sbjct 22711 --GACAGTGTTCTACCATCTTCAAGTTGTTTTCCAGCAAAGATCAATCTCTGTTGGTCTG 22768 Query 134602 GCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATT 134661 | || || || ||||| || || ||||| |||||| || | ||| || || | || Sbjct 22769 GTGGAATTCCCTCTTTGTCCTGGATTTTAGCTTTGACATTTTCAATTGTATCTGATGGTT 22828 Query 134662 CCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | || || ||||| ||||| ||||| || |||||||| || || |||||||| Sbjct 22829 CAACTTCTAGAGTGATGGTCTTACCAGTCAAAGTTTTGACAAAGATTTGCAT 22880 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||||| ||| || | || || || || || ||||| || |||||||||||||| Sbjct 23110 CCTCCTCGGAGACGGAGTACAAGATGGAGTGTTGATTCTTTCTGAATGTTGTAGTCAGAT 23169 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | || || || ||||| || ||||| ||||| | ||| || || || || Sbjct 23170 AGTGTTCTACCATCTTCAAGTTGTTTTCCAGCAAAGATCAATCTCTGTTGGTCTGGTGGA 23229 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || ||||| || || ||||| |||||| || | ||| || || | ||| || Sbjct 23230 ATTCCCTCTTTGTCCTGGATTTTAGCTTTGACATTCTCAATTGTATCTGATGGTTCAACT 23289 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || ||||| ||||| || || || |||||||| ||||| |||||||| Sbjct 23290 TCTAGAGTGATGGTCTTGCCAGTCAAAGTTTTGACGAAGATTTGCAT 23336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 504927286563960