Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Modiolus_20philippinarum_20[genbank_20GCA_5F002080025.1_202017-04- 05] 74,573 sequences; 2,629,556,424 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq11254 289 4e-73 seq45074 179 5e-40 seq66969 114 2e-20 seq36930 89.7 7e-13 >seq11254 Length=169933 Score = 289 bits (320), Expect = 4e-73 Identities = 597/878 (68%), Gaps = 25/878 (3%) Strand=Plus/Minus Query 39310 TGACATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCC 39369 || ||| || ||||| ||||| |||| ||| || | || || ||||| || |||||||| Sbjct 70971 TGTCATCACCCCCATCTTTTGATATTGACCGACCCTCTTTTCAAAAAAGTTGGTTTTGCC 70912 Query 39370 TTCCAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttA-A 39428 ||||| || || || |||||||||| ||||||||| | | ||| || ||||| | | Sbjct 70911 TTCCAGGGAGATGTTCTCCATGAAATTAAACGGATTTGACGAATTGTACAGTTTTTCATA 70852 Query 39429 ATCCTAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCAC 39488 || | ||| ||| | || ||| || || |||||||| ||||| |||||| Sbjct 70851 ATTCAAAT-CTGTCAGCAGTCTGTCGGCTACAAATTCAATGTACTGCCACATCATGGTGT 70793 Query 39489 AATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTA 39548 |||||||| || ||||| || |||| || ||||| | |||||||| ||| || | Sbjct 70792 TGTTCATTCCAATCAGTTTGACGGGTAACGCTTCCGTCAAAAACTCTTGTTCTATCAAAA 70733 Query 39549 CGGCCTCTGTTATTATCGATGTTACTACCTCATCACTC--GGTGGATGCAATAAATGTT- 39605 |||| || | | ||| ||| ||| || ||| |||| | || | Sbjct 70732 CGGCATCCGACACGATCTCGTGTAC--CCTATTCTGCGAGGGTTTATGCTTCAGGTGGTC 70675 Query 39606 --TAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTT 39663 | || | || |||||| || | | | |||| || ||||| ||||| |||| ||||| Sbjct 70674 GTTGAAAAGTAGGCAGGCAAATTGATAGTGTAAACCTTCATCCCTACTGATTAGCTCGTT 70615 Query 39664 AGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGA 39723 || || | || ||||| ||||| || || || | |||||| || ||||||||| Sbjct 70614 GCTGAACGTTAAACCCGGCATGAGACCTCGTTTCTTTAACCAAAAAATTGCAGCAAAACT 70555 Query 39724 TCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGT 39783 ||||||||||||||||||||||| | |||||||| | |||| | | | || | | Sbjct 70554 ACCAGAAAAGAAGATGCCTTCTACCACGGCAAATGCTAGCAGTCGCACGGCAAAATTAGA 70495 Query 39784 ATCATTAT---GTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGT 39840 |||| || ||||||| || ||||| | || ||||||| || ||||| || || Sbjct 70494 ATCAGAATCGTGTATCCAATTTATGGCCCATTTGGCCTTCTTCTGAACGCAAGGTATGGT 70435 Query 39841 TTCTATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAA 39900 |||||| || || | | | | ||| || |||||||| | | |||||||| | Sbjct 70434 TTCTATTGCGTTTAGCAACTGGTCTTTACGTACAGGATCTTTAATAAAAGTATCTATCAT 70375 Query 39901 CAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCT 39960 || || |||||||| || || |||||||| || || |||||||||||||||||| || | Sbjct 70374 CAAGCTGTACATTTCAGAGTGTATGTTTTCCATGGCAATCTGAAATCCGTAAAAAGATTT 70315 Query 39961 TGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCC 40020 ||||| | || || || || |||||| || | || | ||||| || || || || Sbjct 70314 GGCTTCTGGAAACTGGACTTCATTACAAAACCTCTGTGCTAGGTTTTCGTTAACGATGCC 70255 Query 40021 ATCACTAGCGGCAAAAAATGCC--AATACATGTTTAATAAAAT---ATTTTTCATCGGGT 40075 || || || ||||| || ||| ||| | | ||| || | || || ||| Sbjct 70254 GTCGCTTGCAGCAAAGAAAGCCAGAATGGACG--AAATGAACTTGCGTTCTTTTTCG--- 70200 Query 40076 GTCAATTTATT---CCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAA 40132 ||||||| || ||| || | | |||| ||| | || || ||||| | |||||| Sbjct 70199 TTCAATTTGTTCTGCCAATCTTGAACATCTACTGACAAGTCAACCTCTTCTACAGTCCAA 70140 Query 40133 AACGACGCCTCTGCCTTTTTGTACATGTTCCATATATC 40170 |||| ||| |||| |||||||| || ||||||| Sbjct 70139 TACGAAGCCAGGGCCTGCTTGTACATCTTAAATATATC 70102 >seq45074 Length=316632 Score = 179 bits (198), Expect = 5e-40 Identities = 172/220 (78%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 ||||||| ||||| || | ||| ||| || || || |||||||| | || ||||||| Sbjct 222980 CCTCATCCCTACTGATAAGTTCATTACTGAAGGTAAGACCAGGCATAATTCCTCGCTTTT 223039 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 ||||||||||||| || |||||| ||||| || || || ||||| ||||||||||||| Sbjct 223040 TGAGCCAAAATATAGCTGCAAAACTACCAGAGAAAAATATCCCTTCAACTGCTGCAAATG 223099 Query 39759 CAACAAGTCTCTCTCCGTAACTTGTATCATT---ATGTATCCACTTCTGTGCCCAATCAG 39815 | |||| ||||||| | ||| || || || || |||||| ||| | |||||||| | Sbjct 223100 CCACAACTCTCTCTGCATAAGCTGCATTTTTTTCATTTATCCATTTCAGAGCCCAATCTG 223159 Query 39816 CTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 39855 |||||| |||||||| ||||||||||| || ||||| || Sbjct 223160 CTTTCTCTTTTACACATGGCATTGTTTCAATGGCATTGAA 223199 Score = 140 bits (154), Expect = 4e-28 Identities = 155/204 (76%), Gaps = 6/204 (3%) Strand=Plus/Plus Query 39999 CCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAA 40058 ||| ||||||||| || |||||||||||||| ||||| |||||||| ||||| ||| | Sbjct 225510 CCAGATTTTCATTTACAATTCCATCACTAGCAGCAAAGAATGCCAAAACATGGGAAATGA 225569 Query 40059 AATAT---TTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATATCTA 40115 ||| | | |||||| | | || || | ||||| | ||||||||| | ||| | Sbjct 225570 AATGTCTCTCTTCATC--CTTTAAAGTT-TCCCAGTGCACCAAATCTTTTGACAAATCAA 225626 Query 40116 CTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACGAT 40175 ||||||| || |||||||| || || |||||||| |||||||| | ||| || || ||| Sbjct 225627 CTTCTTCTGCAGTCCAAAAAGAGGCTTCTGCCTTCTTGTACATTTGCCAAATGTCGTGAT 225686 Query 40176 ATTGTATTGGAAAAATAACAAATC 40199 | || ||||| || | |||||||| Sbjct 225687 ACTGAATTGGGAAGACAACAAATC 225710 >seq66969 Length=194959 Score = 114 bits (126), Expect = 2e-20 Identities = 166/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 69516 TTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGA 69575 ||| || || || |||||| ||| | || ||||||||||||| ||||||||||| | Sbjct 45370 TTCAAACTCTTCCCCCCAACAATCTTGTAAACCAGGACATTCATGTGGACACATCAGAGT 45429 Query 69576 CCACACATCATCATCCTT--AACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATA 69633 |||| | ||| | ||| || || |||||||| | || |||||||| | || ||| Sbjct 45430 CCACTCTCCAT--TGCTTTCTACACGCTTCATAAACAAGTCTGGAATCCACATGGC-ATA 45486 Query 69634 -AAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTC 69692 || ||||| || | ||| || ||||| |||||||| || || ||| ||| || || || Sbjct 45487 GAATAGATCCCTAGCTCTGTTCTCTTCTTTTCCTGTGTTCTTCTTACAATCAAGGAAATC 45546 Query 69693 CATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTC 69742 | ||||||| |||||| || || || || || || | |||| |||| Sbjct 45547 AAATATATCAGCATGCCAAGGCTCCAGGTACATAGCAAAAGCTCCTGGTC 45596 Score = 109 bits (120), Expect = 8e-19 Identities = 111/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATAT 68500 |||| | || |||||||| ||||||||||| ||| |||| || ||||||||||||| Sbjct 26499 TCCAGGCATAAAAATGCATGCTTGTTAGTTTTCCGTAATTTGGTTCAGCTATATGAATAT 26558 Query 68501 TCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCT 68560 ||| || ||||| ||||| || || |||||||| ||||| ||||| || || | | || Sbjct 26559 TCAGAGACTGACTCTGATCAATAAATGCTCCTCTGTCTGCAGCCATCTTAATTACAGTCC 26618 Query 68561 TTTGAGGAATTTCCCAAATAGTCTT 68585 | || | ||| ||||| | ||| || Sbjct 26619 TCTGTGAAATCTCCCACACAGTTTT 26643 Score = 109 bits (120), Expect = 8e-19 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 || ||||||||||| || ||||| | || || |||||||| ||||| | ||| | |||| Sbjct 30637 TGGAATTCCCCAGACAATACTCTTCTGGTATATATATTACTTGTATAGGCTTCTATAGAT 30696 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 |||||||| || | ||||||||||| || || |||||||| || || | || | || Sbjct 30697 TCATTATTGCCTAAGATTTGAGCAGTAGAAGCTGTTGGCATTGGAGCTAATAACAGGCTG 30756 Query 68839 TTTCTAAGACCATGT 68853 ||||||| ||||||| Sbjct 30757 TTTCTAACACCATGT 30771 Score = 100 bits (110), Expect = 4e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 69315 ATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATT 69374 ||||| || || ||||||||||||||||||||||| || || || ||||||||||| || Sbjct 44484 ATATTCTACAATTTCTGTACATAGATTACTACATTTAATGGTTCCTAGATTTTGCTGGTT 44543 Query 69375 ACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGA 69434 | || ||||||| ||| ||||| | ||| | ||||||||||||||| | || | Sbjct 44544 AGATTTGCGGTTACAGTGGTCTTTGTACAACATATAAGGAGTACCAGTTTCAGTTTGTGC 44603 Query 69435 TTCGATAATAGATTTCCA 69452 || || || || | ||| Sbjct 44604 CTCTATGATGGAGTACCA 44621 Score = 95.1 bits (104), Expect = 2e-14 Identities = 122/166 (73%), Gaps = 2/166 (1%) Strand=Plus/Plus Query 70334 CACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAA 70393 ||||||||| ||| || |||||||||||||| || || | || ||||| |||||||| Sbjct 61079 CACTAAATACTTTCTTGGTTTCCTTGTGTAAGTTAGAGACTGCAATTCTAGCTGCTAGCT 61138 Query 70394 TAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTA 70453 ||||||||| ||||||| || || ||||| ||| |||| ||||| | |||| | Sbjct 61139 GAGCATAGTCTGGATGTTTGGTTGTCATGGTAGCAGCTGTTTCAGCAGCCAGGTTATCCA 61198 Query 70454 ATTCTATAGTTGTAACTCCGTTATA-TAGCCCTTGAATAACTTTCA 70498 ||| | || || || || ||| |||| ||| || ||||||| Sbjct 61199 GTTCAACGGTCGTGACCCCTGGATACAAGCCATTG-ATTACTTTCA 61243 >seq36930 Length=140287 Score = 89.7 bits (98), Expect = 7e-13 Identities = 236/355 (66%), Gaps = 19/355 (5%) Strand=Plus/Plus Query 163174 GGTGGAATGATGGCTGTCTTTTTGATGGGTTGCTATGATGACGAGTCTGGTAAATGGAAG 163233 |||||||| ||| || | |||||| |||||| ||||| || || | |||| Sbjct 114576 GGTGGAATTATGTCTATATTTTTGTTGGGTTCATATGACC------CTCATACAAAGAAG 114629 Query 163234 ------ACAGTAACTAAATGTTCC---GGACACGATGATAATACGTTAAGGGTTCTACAA 163284 ||||||||||||||| | || ||||| || | ||| || || | | Sbjct 114630 TTCTGTACAGTAACTAAATGTGGCAGTGGGTTTGATGACAAGAGATTAGAGGAACTTC-A 114688 Query 163285 GAC-CAATTAAAGATGATTAAAATTAGTAAGGATCCaaaaaaaGTACCAGAGTGGTTGGT 163343 ||| ||||| | | | ||||| ||||| |||| | |||||||| ||| || Sbjct 114689 GACAGAATTAGATGTTGTAAAAATAAGTAAAGATCAATCTAAAGTACCCAGCTGGCTGAA 114748 Query 163344 AGTTAATAAAATCTATA-TTCCAGATTTTGTAGCAGAGGATCCAAAACAATCTCCTATCT 163402 || || || | || || ||||||| ||||| | | ||||| || |||||| | | Sbjct 114749 TGTGAACAAGA-CTTTAGTTCCAGACTTTGTTGTGAAAGATCCCAAGACATCTCCAGTGT 114807 Query 163403 GGGAAATTTCAGGAGCTGAGTTTACTTCATCCAAATCTCATACAGCAAATGGAATATCCA 163462 ||||||| ||||| ||||||| | |||| || |||||||| |||| ||||| | Sbjct 114808 GGGAAATAATGGGAGCAGAGTTTAGTCATTCCAGTTCACATACAGCTGATGGGATATCTA 114867 Query 163463 TTAGATTTCCTAGATTTACTAGGATCAGAAATGATAAAACGTGGAAAGAATCAAC 163517 | |||||||| | || ||| | ||| | |||||||| ||| || | |||| Sbjct 114868 TAAGATTTCCACGTATTGCTAAAGTTAGAGACGATAAAACATGGGAAAATGCAAC 114922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686268489375720