Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Modiolus_20philippinarum_20[genbank_20GCA_5F002080025.1_202017-04- 05] 74,573 sequences; 2,629,556,424 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq11254 244 8e-60 seq45074 149 5e-31 >seq11254 Length=169933 Score = 244 bits (270), Expect = 8e-60 Identities = 606/905 (67%), Gaps = 25/905 (3%) Strand=Plus/Plus Query 43739 ATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGAC 43798 |||||||| | || | ||| || | |||||| | |||||| ||||| ||| | ||| Sbjct 70114 ATGTACAAGCAGGCCCTGGCTTCGTATTGGACTGTAGAAGAGGTTGACTTGTCAGTAGAT 70173 Query 43799 TTAGCACATTGG---ATTGCATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTG 43855 | | ||||| | ||| || | ||||| | || || || | || || Sbjct 70174 GTTCAAGATTGGCAGAACAAATTGAACGAAAAAGAACGCAAGTTCATTTCGTCCATTCTG 70233 Query 43856 GCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAA 43915 || || |||||||| |||||||| || || || ||||| | | ||||| | Sbjct 70234 GCTTTCTTTGCTGCAAGCGACGGCATCGTTAACGAAAACCTAGCACAGAGGTTTTGTAAT 70293 Query 43916 GAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATT 43975 ||||| || || |||||||| || |||||| || ||||| |||||||| ||||| || Sbjct 70294 GAAGTCCAGTTTCCAGAAGCCAAATCTTTTTACGGATTTCAGATTGCCATGGAAAACATA 70353 Query 43976 CATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGG-GCACGAGAAGCA 44034 || || ||||||||||| | |||||||||| | || |||||| | ||| ||| | Sbjct 70354 CACTCTGAAATGTACAGCTTGATGATAGATACTTTTATTAAAGATCCTGTACGTAAAG-A 70412 Query 44035 TCGATTGTTTAATGCGATAGAAACAGTACCT-GCGATTAAACATAAAGCAGACTGGGCCC 44093 | ||| | || || |||||||| ||||| ||| | | | | || || | |||||| Sbjct 70413 CCAGTTGCTAAACGCAATAGAAACCATACCTTGCGTTCAGA-AGAAGGCCAAATGGGCCA 70471 Query 44094 TTAAATGGATAAA---TTCAAATGATTCT---TTTGGAGAACGACTTGTCGCGTTTGCAG 44147 | || |||||| | ||| ||||||| |||| | ||||| | || ||||| | Sbjct 70472 TAAATTGGATACACGATTC---TGATTCTAATTTTGCCGTGCGACTGCTAGCATTTGCCG 70528 Query 44148 TTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAG 44207 | || |||||||| |||||||| || ||||| || || ||||||||||||||||||| Sbjct 70529 TGGTAGAAGGCATCTTCTTTTCTGGTAGTTTTGCTGCAATTTTTTGGTTAAAGAAACGAG 70588 Query 44208 GTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATT 44267 || | ||||| || || ||||| || ||| |||| ||| | |||||||| ||||| | Sbjct 70589 GTCTCATGCCGGGTTTAACGTTCAGCAACGAGCTAATCAGTAGGGATGAAGGTTTACACT 70648 Query 44268 GCGATTTTGCTTGCTTGTTACTTGGATATCTAGGAGACG-ATAAGCCTTCATGTAAGACA 44326 | ||||| ||| | | || | | | || | |||| || || || | Sbjct 70649 ATCAATTTGCCTGCCTACT-TTTCAACGACCACCTGAAGCATAAACCCTCGCAGAATA-G 70706 Query 44327 ATTACA-GATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGCATT 44385 |||| || || || || || || |||||||||||| ||| |||| ||| || Sbjct 70707 GGTACACGAGATCGTGTCGGATGCCGTTTTGATAGAACAAGAGTTTTTGACGGAAGCGTT 70766 Query 44386 ACCTGTAAATTTAATAGGAATGAATGAACTTTTGATGAACCAATATATTGAATACATTGC 44445 ||| || || | || |||||||| | ||||| || || ||||||| | || Sbjct 70767 ACCCGTCAAACTGATTGGAATGAACAACACCATGATGTGGCAGTACATTGAATTTGTAGC 70826 Query 44446 AGATCGTTTACTTTTGGAACTGGGTTGCGATAAACACTATATTGTACAAAACCCGTTTGA 44505 || | | || || || || || |||| || | | ||| |||||| | Sbjct 70827 CGACAGACTGCTGACAGATTTGAATTATGAAAAACTGTACAATTCGTCAAATCCGTTTAA 70886 Query 44506 TTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGA 44565 ||| ||||| || || || ||||||||||||| |||||||||||||| | || || | Sbjct 70887 TTTCATGGAGAACATCTCCCTGGAAGGCAAAACCAACTTTTTTGAAAAGAGGGTCGGTCA 70946 Query 44566 ATATCAGCGAATGGGCGTCATGATAACAAGTGACAATAA-ATTTACTACGGATGAAGATT 44624 |||||| ||||| || |||| || ||| || |||||| | |||||||| | Sbjct 70947 ATATCAAAAGATGGGGGTGATGA----CAGATACACGAACATTTACGATAGATGAAGAAT 71002 Query 44625 TCTAA 44629 | ||| Sbjct 71003 TTTAA 71007 >seq45074 Length=316632 Score = 149 bits (164), Expect = 5e-31 Identities = 153/200 (77%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 ||||| || || |||||||| ||||| ||||| |||||||||||||| || ||| | || Sbjct 225708 TTTGTTGTCTTCCCAATTCAGTATCACGACATTTGGCAAATGTACAAGAAGGCAGAAGCC 225649 Query 43760 TCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCATTA 43819 || |||||||| |||||||||||||||||| | ||||| || | || ||| | ||| Sbjct 225648 TCTTTTTGGACTGCAGAAGAAGTTGATTTGTCAAAAGATTTGGTGCACTGGGAAACTTTA 225589 Query 43820 AAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGG 43879 || |||| | |||||| || || |||||||| || |||||||| || || || Sbjct 225588 AAGGATGAAGAGAGACATTTCATTTCCCATGTTTTGGCATTCTTTGCTGCTAGTGATGGA 225529 Query 43880 ATAGTCAATGAAAATTTGGT 43899 || || ||||||||| |||| Sbjct 225528 ATTGTAAATGAAAATCTGGT 225509 Score = 104 bits (114), Expect = 2e-17 Identities = 158/222 (71%), Gaps = 5/222 (2%) Strand=Plus/Minus Query 44039 TTGTTTAATGCGATAGAAACAGTACC-TGCGATTAAACATAAAGCAGACTGGGCCCTTAA 44097 ||||| ||||| || |||||| | || || | | ||| | |||||||| ||||| || || Sbjct 223202 TTGTTCAATGCCATTGAAACAATGCCATGTG-TAAAAGAGAAAGCAGATTGGGCTCTGAA 223144 Query 44098 ATGGATAAAT---TCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGA 44154 |||||||||| ||||| ||| || ||| || |||| || ||||||| || || Sbjct 223143 ATGGATAAATGAAAAAAATGCAGCTTATGCAGAGAGAGTTGTGGCATTTGCAGCAGTTGA 223084 Query 44155 AGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGAT 44214 ||| || || || || || ||||| || ||||||||| | || || ||||| | || Sbjct 223083 AGGGATATTTTTCTCTGGTAGTTTTGCAGCTATATTTTGGCTCAAAAAGCGAGGAATTAT 223024 Query 44215 GCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGA 44256 |||||| | || || ||||| | || ||| | ||||| Sbjct 223023 GCCTGGTCTTACCTTCAGTAATGAACTTATCAGTAGGGATGA 222982 Score = 100 bits (110), Expect = 2e-16 Identities = 79/95 (83%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 ||||||| ||||||||||||||| | ||||| ||||||| ||||| ||||||||||||| Sbjct 220584 AAAACCCATTTGATTTTATGGAACAGATTTCACTGGAAGGAAAAACGAACTTTTTTGAAA 220525 Query 44553 AACGCGTTGGAGAATATCAGCGAATGGGCGTCATG 44587 | | |||||||||||||| ||||| || ||| Sbjct 220524 AGAGAGTTGGAGAATATCAAAAGATGGGTGTAATG 220490 Score = 93.3 bits (102), Expect = 3e-14 Identities = 74/89 (83%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 43931 GAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTAC 43990 |||||| ||||||| ||||| || ||||| ||||| |||||||| || || ||||||||| Sbjct 224545 GAAGCAAGATGTTTCTATGGCTTCCAAATAGCCATGGAAAATATCCACTCTGAAATGTAC 224486 Query 43991 AGTCTTCTGATAGATACGTACATCAAAGA 44019 ||||| || || || || ||||| ||||| Sbjct 224485 AGTCTACTTATTGACACCTACATTAAAGA 224457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397094768760865