Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Modiolus_20philippinarum_20[genbank_20GCA_5F002080025.1_202017-04- 05] 74,573 sequences; 2,629,556,424 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq9175 118 9e-22 seq35982 113 4e-20 seq11254 107 2e-18 seq66969 86.0 5e-12 >seq9175 Length=65522 Score = 118 bits (130), Expect = 9e-22 Identities = 171/239 (72%), Gaps = 2/239 (1%) Strand=Plus/Plus Query 27017 ATTGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC 27076 ||| || || || | |||||||| ||||| | || || ||||| ||||| |||||||| Sbjct 22650 ATTTCCACCACGTAGACGCAATACTAAATGGAGTGTGGATTCTTTCTGAATGTTGTAGTC 22709 Query 27077 GCTCA-TGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCG 27135 | || |||| | | ||||| || ||||| || || | || | | |||||| || | Sbjct 22710 GGACAGTGTTCTAC-CATCTTCAAGTTGTTTTCCAGCAAAGATCAATCTCTGTTGGTCTG 22768 Query 27136 GCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTT 27195 | || | |||||||| || ||| || ||| | |||| | || |||| | || Sbjct 22769 GTGGAATTCCCTCTTTGTCCTGGATTTTAGCTTTGACATTTTCAATTGTATCTGATGGTT 22828 Query 27196 CAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCT 27254 ||||||||||||| || | || || |||| |||||| ||||||||||||||| || || Sbjct 22829 CAACTTCTAGAGTGATGGTCTTACCAGTCAAAGTTTTGACAAAGATTTGCATACCTCCT 22887 Score = 96.9 bits (106), Expect = 3e-15 Identities = 164/235 (70%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCT 27079 ||||| || | || | ||| | ||| | || || ||||| |||||||||||||| | | Sbjct 22882 CCTCCTCGGAGACGGAGTACAAGATGGAGTGTTGATTCTTTCTGAATATTGTAGTCAGAT 22941 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 |||| | | ||||| || ||||| ||||| | || | | |||||| || || || Sbjct 22942 AGTGTTCTAC-CATCTTCAAGTTGTTTTCCGGCAAAGATCAATCTCTGTTGGTCTGGTGG 23000 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | |||||||| || ||| || ||| | | || | || |||| | |||||| Sbjct 23001 AATTCCCTCTTTGTCCTGGATTTTAGCTTTGACATTCTCAATTGTATCTGATGGTTCAAC 23060 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCT 27254 |||||| || || | ||||| |||| ||||| || |||||||||||| || || Sbjct 23061 TTCTAGCGTGATGGTCTTGCCAGTCAATGTTTTGACGAAGATTTGCATACCTCCT 23115 Score = 96.9 bits (106), Expect = 3e-15 Identities = 164/235 (70%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCT 27079 ||||| || | || | ||| | ||| | || || ||||| ||||| |||||||| | | Sbjct 23110 CCTCCTCGGAGACGGAGTACAAGATGGAGTGTTGATTCTTTCTGAATGTTGTAGTCAGAT 23169 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 |||| | | ||||| || ||||| || || | || | | |||||| || || || Sbjct 23170 AGTGTTCTAC-CATCTTCAAGTTGTTTTCCAGCAAAGATCAATCTCTGTTGGTCTGGTGG 23228 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | |||||||| || ||| || ||| | | || | || |||| | |||||| Sbjct 23229 AATTCCCTCTTTGTCCTGGATTTTAGCTTTGACATTCTCAATTGTATCTGATGGTTCAAC 23288 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCT 27254 ||||||||| || | ||||| |||| |||||| || |||||||||||| || || Sbjct 23289 TTCTAGAGTGATGGTCTTGCCAGTCAAAGTTTTGACGAAGATTTGCATACCTCCT 23343 >seq35982 Length=112201 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| | ||| | || |||||||| | || || ||||| || || |||||||| | Sbjct 104418 CCTCCTCTCAATCTTAAGACCAAATGAAGTGTTGACTCTTTCTGGATGTTGTAGTCTGAC 104359 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | || | ||||| | ||||| || || | || ||||| || ||||| || || Sbjct 104358 AATGTACGACCATCTTCTAATTGTTTGCCAGCAAAGATAAGACGTTGCTGATCTGGAGGA 104299 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||||||||| ||| ||| || | |||| | |||||||| | ||| ||| Sbjct 104298 ATTCCCTCTTTATCCTGGATTTTGGCCTTTACATTTTCGATAGTGTCTGAAGGTTCTACT 104239 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || |||| ||| || ||||| ||||||||||| || ||||| Sbjct 104238 TCAAGGGTGATAGTTTTCCCTGTCAGTGTTTTCACAAATATCTGCAT 104192 >seq11254 Length=169933 Score = 107 bits (118), Expect = 2e-18 Identities = 288/435 (66%), Gaps = 18/435 (4%) Strand=Plus/Minus Query 108278 TTTCGAAAAAGTTGGTTTTGCCTTCTAGCGAAATCATGTTCATAAAATGAAAGGGATTAG 108337 |||| |||||||||||||||||||| || || || | | ||| |||| ||| ||||| | Sbjct 70933 TTTCAAAAAAGTTGGTTTTGCCTTCCAGGGAGATGTTCTCCATGAAATTAAACGGATTTG 70874 Query 108338 GTGTGTAATAGTA---TTTGGAGTATTTGAGATTAGTGAGCAACCAATCGGCCACAAACT 108394 | ||| ||| ||| || || | || || |||| | ||||| ||||| | Sbjct 70873 ACG---AATTGTACAGTTTTTCATAATTCAAATCTGTCAGCAGTCTGTCGGCTACAAATT 70817 Query 108395 CTATATAACTGC-ACATCAAGTGCGAATTCATGCCCAACAGCGCCACGGGTATTGCGTTA 108453 | || || |||| |||||| | ||||| || | ||| ||||||| || | Sbjct 70816 CAATGTA-CTGCCACATCATGGTGTTGTTCATTCCAATCAGTTTGACGGGTAACGCTTCC 70758 Query 108454 GTGAAAAAGtttttttCAATCTCGACCGCTTCCTTCACCATCGCCAGTACGGTAGTTTCG 108513 || ||||| | || ||| ||| || || ||| ||| ||| | |||| || | | Sbjct 70757 GTCAAAAACTCTTGTTCTATCAAAACGGCATCCGACACGATCTCGTGTACCCTATTCTGC 70698 Query 108514 CTCAACTTGTGCTTCTCCTCAATGTGATTATTGTAGTATTCGCAAGCGAACAAGCAATGT 108573 || |||||| | ||| | ||| | | ||| || || | ||| Sbjct 70697 GAGGGTTTATGCTTC------AGGTGGTCGTTGAAAAGTAGGCAGGCAAATTGATAGTGT 70644 Query 108574 AATCCTTCGTCGCGACTTATGAGCTCGTTACTGAACGTCAAACCCGGCATAATACCTTTC 108633 || ||||| || | ||| || |||||||| |||||||| ||||||||||| | ||| || Sbjct 70643 AAACCTTCATCCCTACTGATTAGCTCGTTGCTGAACGTTAAACCCGGCATGAGACC--TC 70586 Query 108634 GTT--TTAATGTAAAATATTGCCGCAAAACTGCCGGaaaaaaaTATTCCCTCGACAATTG 108691 ||| || | |||| ||||| |||||||| || ||||| || || || || || | | Sbjct 70585 GTTTCTTTAACCAAAAAATTGCAGCAAAACTACCAGAAAAGAAGATGCCTTCTACCACGG 70526 Query 108692 CAAACGCAACCATTC 108706 |||| || | || || Sbjct 70525 CAAATGCTAGCAGTC 70511 >seq66969 Length=194959 Score = 86.0 bits (94), Expect = 5e-12 Identities = 124/175 (71%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 131603 GGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAAC 131662 |||||||| |||||||| || | |||| | || || ||| || |||||||||||| Sbjct 45404 GGACATTCATGTGGACACATCAGAGTCCACTCTCCATTGCTTTCTACACGCTTCATAAAC 45463 Query 131663 AAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATA 131722 || || || | ||| | || || || ||||| |||||| | ||||||||| | || | Sbjct 45464 AAGTCTGGAATCCACATGGCATAGAATAGATCCCTAGCTCTGTTCTCTTCTTTTCCTGTG 45523 Query 131723 AtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACA 131777 | || || ||| | || || || || || |||||||| || |||| |||| Sbjct 45524 TTCTTCTTACAATCAAGGAAATCAAATATATCAGCATGCCAAGGCTCCAGGTACA 45578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424548194785176