Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Modiolus_20philippinarum_20[genbank_20GCA_5F002080025.1_202017-04- 05] 74,573 sequences; 2,629,556,424 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq9175 172 6e-38 seq35982 145 9e-30 seq11254 98.7 1e-15 seq45074 82.4 9e-11 >seq9175 Length=65522 Score = 172 bits (190), Expect = 6e-38 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||||||||| || | || || ||||| || ||||| || ||||| || Sbjct 22880 ATGCAAATCTTTGTCAAAACTTTGACTGGTAAGACCATCACTCTAGAAGTTGAACCATCA 22821 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| |||| | || |||||||| |||||||| ||||||||||| |||||||| Sbjct 22820 GATACAATTGAAAATGTCAAAGCTAAAATCCAGGACAAAGAGGGAATTCCACCAGACCAA 22761 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || |||||||| || ||||| || |||| | | || || | ||||| || Sbjct 22760 CAGAGATTGATCTTTGCTGGAAAACAACTTGAAGATGGTAGAACACTGTCCGACTACAAC 22701 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | || || |||||||| || ||| |||| |||||||| || |||||| Sbjct 22700 ATTCAGAAAGAATCCACACTCCATTTAGTATTGCGTCTACGTGGTGGA 22653 Score = 152 bits (168), Expect = 6e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| ||||| || | || |||||||| || ||||| || ||||| || Sbjct 23336 ATGCAAATCTTCGTCAAAACTTTGACTGGCAAGACCATCACTCTAGAAGTTGAACCATCA 23277 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| ||| | || |||||||| |||||||| ||||||||||| |||||||| Sbjct 23276 GATACAATTGAGAATGTCAAAGCTAAAATCCAGGACAAAGAGGGAATTCCACCAGACCAA 23217 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || |||||||| || ||||| || |||| | | || ||| | ||||| || Sbjct 23216 CAGAGATTGATCTTTGCTGGAAAACAACTTGAAGATGGTAGAACACTATCTGACTACAAC 23157 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || || ||||| || || ||||| || | ||||| || || || Sbjct 23156 ATTCAGAAAGAATCAACACTCCATCTTGTACTCCGTCTCCGAGGAGG 23110 Score = 149 bits (164), Expect = 7e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| ||||| || | || |||||||| || || || || ||||| || Sbjct 23108 ATGCAAATCTTCGTCAAAACATTGACTGGCAAGACCATCACGCTAGAAGTTGAACCATCA 23049 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| ||| | || |||||||| |||||||| ||||||||||| |||||||| Sbjct 23048 GATACAATTGAGAATGTCAAAGCTAAAATCCAGGACAAAGAGGGAATTCCACCAGACCAA 22989 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || ||||| || || ||||| || |||| | | || ||| | ||||| ||| Sbjct 22988 CAGAGATTGATCTTTGCCGGAAAACAACTTGAAGATGGTAGAACACTATCTGACTACAAT 22929 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || || ||||| || || ||||| || | ||||| || || || Sbjct 22928 ATTCAGAAAGAATCAACACTCCATCTTGTACTCCGTCTCCGAGGAGG 22882 >seq35982 Length=112201 Score = 145 bits (160), Expect = 9e-30 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || ||||| || ||||| || || || || || ||||| || || || | Sbjct 104876 ATGCAAATTTTCGTCAAAACACTTACTGGAAAAACAATAACACTTGAAGTGGAACCATCT 104935 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | || ||||||||||| || || || || ||||||||||| ||| Sbjct 104936 GACACTATCGAAAACGTAAAAGCTAAAATTCAAGATAAAGAAGGTATTCCTCCAGATCAG 104995 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| || ||||||||||| ||| | || |||| |||||| | | || ||||| Sbjct 104996 CAACGTCTTATCTTTGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCGGATTATAAC 105055 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 |||| || || ||||| |||||| | |||||| Sbjct 105056 ATCCAGAAAGAGTCCACGCTTCATTTGGTCTTG 105088 Score = 140 bits (154), Expect = 4e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| || || || || || || ||||| || ||||| || || | Sbjct 104192 ATGCAGATATTTGTGAAAACACTGACAGGGAAAACTATCACCCTTGAAGTAGAACCTTCA 104251 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | |||| | ||||| ||||| ||||| || ||||||||||||||||| ||| Sbjct 104252 GACACTATCGAAAATGTAAAGGCCAAAATCCAGGATAAAGAGGGAATTCCTCCAGATCAG 104311 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| || |||||||| || ||| | || |||| |||||| | ||||||| || Sbjct 104312 CAACGTCTTATCTTTGCTGGCAAACAATTAGAAGATGGTCGTACATTGTCAGACTACAAC 104371 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTT 27617 |||| || || || || |||||| | ||||| Sbjct 104372 ATCCAGAAAGAGTCAACACTTCATTTGGTCTT 104403 Score = 134 bits (148), Expect = 2e-26 Identities = 158/214 (74%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| |||||||| || | || || || || |||||||| || || || || Sbjct 104419 AATGCAAATTTTTGTCAAAACTTTGACAGGAAAAACAATTACTCTGGAAGTGGAACCATC 104478 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | || | ||| | || ||||| || || || || || || ||||||||||| || Sbjct 104479 TGACACTATCGAAAACGTAAAAGCTAAGATCCAAGATAAAGAAGGTATTCCTCCAGATCA 104538 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| ||||| || ||||||||||| ||| | || |||| |||||| | ||||||| || Sbjct 104539 GCAACGTCTTATCTTTGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCAGACTACAA 104598 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 | || || || || || |||||| | |||||| Sbjct 104599 CATTCAGAAAGAGTCAACACTTCATTTGGTCTTG 104632 Score = 132 bits (146), Expect = 5e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || ||||| || |||||||| || || || || ||||| || || || Sbjct 105104 ATGCAAATTTTCGTCAAAACACTTACCGGAAAAACAATAACACTTGAAGTGGAACCATCA 105163 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | || ||||| || || || || || || ||||||||||| ||| Sbjct 105164 GACACTATCGAAAACGTAAAAGCTAAGATCCAAGATAAAGAAGGTATTCCTCCAGATCAG 105223 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| || ||||||||||| ||| | || |||| |||||| | |||| || || Sbjct 105224 CAACGTCTTATCTTTGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCAGATTACAAC 105283 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 |||| || || || || |||||| | |||||| Sbjct 105284 ATCCAGAAAGAGTCGACACTTCATTTGGTCTTG 105316 Score = 127 bits (140), Expect = 2e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || ||||| || ||||| || || || || || ||||| || || || Sbjct 104648 ATGCAAATTTTCGTCAAAACACTTACTGGAAAAACAATAACACTTGAAGTGGAACCATCA 104707 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | || || || || || || || || || ||||||||||| ||| Sbjct 104708 GACACTATCGAAAACGTAAAAGCCAAGATCCAAGATAAAGAAGGTATTCCTCCAGATCAG 104767 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| || ||||||||||| ||| | || |||| |||||| | | ||||| || Sbjct 104768 CAACGTCTTATCTTTGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCGGACTACAAC 104827 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 |||| || || ||||| |||||| | |||||| Sbjct 104828 ATCCAGAAAGAGTCCACACTTCATTTGGTCTTG 104860 Score = 123 bits (136), Expect = 3e-23 Identities = 119/153 (78%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543 || ||||||||||| || || || || ||||||||||| ||||| ||||| || |||||| Sbjct 105756 AAAGCTAAAATTCAAGATAAAGAAGGTATTCCTCCAGATCAGCAACGTCTTATCTTTGCT 105815 Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603 ||||| ||| | || |||| |||||| | ||||||| || |||| || || || || Sbjct 105816 GGTAAACAATTAGAAGATGGTCGTACATTGTCAGACTACAACATCCAGAAAGAGTCAACC 105875 Query 27604 CTTCATCTAGTCTTGCGTCTTCGCGGTGGACAA 27636 |||||| |||| |||||| | | || |||||| Sbjct 105876 CTTCATTTAGTGTTGCGTTTGAGAGGAGGACAA 105908 Score = 120 bits (132), Expect = 3e-22 Identities = 132/176 (75%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || ||||| || ||||| || || || || || ||||| || || || | Sbjct 105332 ATGCAAATTTTCGTCAAAACACTTACAGGAAAAACAATAACACTTGAAGTGGAACCATCT 105391 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | || ||||||||||| || || || || ||||||||||| ||| Sbjct 105392 GACACTATCGAAAACGTAAAAGCTAAAATTCAAGATAAAGAAGGTATTCCTCCAGATCAG 105451 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTA 27581 || ||||| || |||||||| || ||| | || |||| |||||| | ||||||| Sbjct 105452 CAACGTCTTATCTTTGCTGGGAAACAATTAGAAGATGGTCGTACGTTGTCAGACTA 105507 >seq11254 Length=169933 Score = 98.7 bits (108), Expect = 1e-15 Identities = 300/450 (67%), Gaps = 28/450 (6%) Strand=Plus/Plus Query 64725 AGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTT-CTATTTTCTGGC 64783 ||| |||||| || ||||| || ||||||||||| | || || | | ||||| ||| Sbjct 70518 AGCATTTGCCGTGGTAGAAGGCATCTTCTTTTCTGG-TAGTTTTGCTGCAATTTTTTGGT 70576 Query 64784 TAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACG 64843 |||| || || || || ||||| ||| | |||| |||||||| ||| | |||| | Sbjct 70577 TAAAGAAACGAGGTCTCATGCCGGGTTTAACGTTCAGCAACGAGCTAATCAGTAGGGATG 70636 Query 64844 AGGGGCTCCACCAAGAATTTGCGGTTACC--CTGTTCAGC---CACCTCAAGGACAAACC 64898 | || | ||| | ||||||| | || || |||| | ||||| ||| | ||||| Sbjct 70637 AAGGTTTACACTATCAATTTGCC--TGCCTACTTTTCAACGACCACCTGAAGCATAAACC 70694 Query 64899 ATCACATGGGACTA---TAATTGATATAGTAAAATCGGCTGTAGAA---ATTGAAAAGGA 64952 || || || || || || || || |||| || | || ||| | || Sbjct 70695 CTCGCA---GAATAGGGTACACGAGATCGTG---TCGGATGCCGTTTTGATAGAACAAGA 70748 Query 64953 ATTCATTACTGCCGCGCTTCCGTGTCGT-CTCATCGGCATGGATGCCGATAAGATGAAAC 65011 || | || | ||| | || ||| || || || ||| | | | |||| | Sbjct 70749 GTTTTTGACGGAAGCGTTACCC-GTCAAACTGATTGGAATGAACAACACCATGATGTGGC 70807 Query 65012 AGTATATCGAATTTGTAGCAGATCGCCTGCTTACTCAGTTTGGTATTAAGCCCTACTGGA 65071 |||| || ||||||||||| || | ||||| || || || | |||| | |||| | Sbjct 70808 AGTACATTGAATTTGTAGCCGACAGACTGCTGAC--AGATTTGAATTATGAAAAACTGTA 70865 Query 65072 --ATTCTTCAAATCCATTTGACTGGATGGAGACGATCAGCCTGGAGGGGAAGACTAACTT 65129 |||| |||||||| ||| | | ||||||| ||| |||||| || || || ||||| Sbjct 70866 CAATTCGTCAAATCCGTTTAATTTCATGGAGAACATCTCCCTGGAAGGCAAAACCAACTT 70925 Query 65130 TTTTGAAAAGAGGGTAGGTGATTACTCAAA 65159 ||||||||||||||| ||| | || ||||| Sbjct 70926 TTTTGAAAAGAGGGTCGGTCAATA-TCAAA 70954 >seq45074 Length=316632 Score = 82.4 bits (90), Expect = 9e-11 Identities = 99/131 (76%), Gaps = 3/131 (2%) Strand=Plus/Minus Query 64917 TGATATAGTAAAATCGGCTGTAGAAATTGAAAAGGAATTCATTACTGCCGCGCTTCCGTG 64976 ||| ||| | ||| || |||||||||||| || ||||| |||| | ||||| || || Sbjct 221424 TGAAATAATCAAAGATGCAGTAGAAATTGAACAGAAATTCCTTACAGAAGCGCTACCATG 221365 Query 64977 TCGTCTCATCGGCATGGAT-GCCGATAAGATGAAACAGTATATCGAATTTGTAGCAGATC 65035 | | || || ||| || || || | |||||||||||||| ||||||||||| |||| Sbjct 221364 CAATTTGATAGGAATGAATTGCACATTA-ATGAAACAGTATATAGAATTTGTAGCCGATC 221306 Query 65036 GCCTGCTTACT 65046 | ||| ||||| Sbjct 221305 GTCTG-TTACT 221296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569778778031760