Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Modiolus_20philippinarum_20[genbank_20GCA_5F002080025.1_202017-04- 05] 74,573 sequences; 2,629,556,424 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq35982 138 3e-27 seq9175 123 6e-23 >seq35982 Length=112201 Score = 138 bits (152), Expect = 3e-27 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| | ||| | ||||| ||||||||||| |||||||||||||||| | || | || Sbjct 105091 TCTCAAGACCAAATGAAGCGTGGACTCTTTCTGGATGTTATAATCCGACAATGTACGACC 105032 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||| | || || || || |||||||| ||||| || || ||||||| ||||| || Sbjct 105031 ATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGAGGAATACCTTCTTT 104972 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 || || || || ||| ||||||||||| |||||||| ||| || || || || || Sbjct 104971 ATCTTGAATTTTAGCTTTTACGTTTTCGATAGTGTCAGATGGTTCCACTTCAAGTGTTAT 104912 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || || || || || || | ||||| Sbjct 104911 TGTTTTTCCAGTAAGTGTTTTGACGAAAATTTGCAT 104876 Score = 134 bits (148), Expect = 3e-26 Identities = 160/217 (74%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| | ||| | ||||| || |||||||| || ||||| || || | | || | || Sbjct 104635 TCTCAAGACCAAATGAAGTGTTGACTCTTTCTGAATGTTGTAGTCTGACAATGTACGACC 104576 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||| | || || || || |||||||| ||||| || || ||||||| ||||| || Sbjct 104575 ATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGAGGAATACCTTCTTT 104516 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 || |||||||| ||| ||||||||||| |||||||| ||| || || ||||| || Sbjct 104515 ATCTTGGATCTTAGCTTTTACGTTTTCGATAGTGTCAGATGGTTCCACTTCCAGAGTAAT 104456 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || ||||| || | ||| || ||||| | |||||| Sbjct 104455 TGTTTTTCCTGTCAAAGTTTTGACAAAAATTTGCATT 104419 Score = 132 bits (146), Expect = 1e-25 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| | ||| | ||||| ||||||||||| |||||||| || |||| | || | || Sbjct 104863 TCTCAAGACCAAATGAAGTGTGGACTCTTTCTGGATGTTGTAGTCCGACAATGTACGACC 104804 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||| | || || || || |||||||| ||||| || || ||||||| ||||| || Sbjct 104803 ATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGAGGAATACCTTCTTT 104744 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 || |||||||| ||| ||||||||||| ||||| || ||| || || || || || Sbjct 104743 ATCTTGGATCTTGGCTTTTACGTTTTCGATAGTGTCTGATGGTTCCACTTCAAGTGTTAT 104684 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || || || || || || | ||||| Sbjct 104683 TGTTTTTCCAGTAAGTGTTTTGACGAAAATTTGCAT 104648 Score = 129 bits (142), Expect = 1e-24 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| | ||| | ||||| || |||||||| |||||||| ||||| | | || | || Sbjct 105319 TCTCAAGACCAAATGAAGTGTCGACTCTTTCTGGATGTTGTAATCTGACAATGTACGACC 105260 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||| | || || || || |||||||| ||||| || || ||||||| ||||| || Sbjct 105259 ATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGAGGAATACCTTCTTT 105200 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 || |||||||| ||| ||||||||||| ||||| || ||| || || || || || Sbjct 105199 ATCTTGGATCTTAGCTTTTACGTTTTCGATAGTGTCTGATGGTTCCACTTCAAGTGTTAT 105140 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || || || || || || | ||||| Sbjct 105139 TGTTTTTCCGGTAAGTGTTTTGACGAAAATTTGCAT 105104 Score = 96.9 bits (106), Expect = 8e-15 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 |||||||| | || || || || |||||||| ||||| || || ||||||| ||||| Sbjct 105489 CCATCTTCTAATTGTTTCCCAGCAAAGATAAGACGTTGCTGATCTGGAGGAATACCTTCT 105430 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 || || || || || ||| ||||||||||| |||||||| ||| || || || || Sbjct 105429 TTATCTTGAATTTTAGCTTTTACGTTTTCGATAGTGTCAGATGGTTCCACTTCAAGTGTT 105370 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| || || || || || || | ||||| Sbjct 105369 ATTGTTTTTCCTGTAAGTGTTTTGACGAAAATTTGCAT 105332 Score = 96.9 bits (106), Expect = 8e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 ||||| || |||||||| |||||||| || || | | || | |||||||| | || Sbjct 105880 TGAAGGGTTGACTCTTTCTGGATGTTGTAGTCTGACAATGTACGACCATCTTCTAATTGT 105821 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || || |||||||| ||||| || || ||||||| ||||| || || || || || Sbjct 105820 TTACCAGCAAAGATAAGACGTTGCTGATCTGGAGGAATACCTTCTTTATCTTGAATTTTA 105761 Query 211032 TGTTTCACGTTTTCGATGGTGTC 211054 ||| ||||||||||| ||||| Sbjct 105760 GCTTTTACGTTTTCGATAGTGTC 105738 >seq9175 Length=65522 Score = 123 bits (136), Expect = 6e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || || ||||| ||||| || ||||| || || | || || || |||||||| || || Sbjct 22678 TGGAGTGTGGATTCTTTCTGAATGTTGTAGTCGGACAGTGTTCTACCATCTTCAAGTTGT 22737 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || || ||||| | | |||||||| || |||| ||| || ||||||||||| || Sbjct 22738 TTTCCAGCAAAGATCAATCTCTGTTGGTCTGGTGGAATTCCCTCTTTGTCCTGGATTTTA 22797 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 ||| || ||||| || || || || |||||| || |||||||| ||||| || || Sbjct 22798 GCTTTGACATTTTCAATTGTATCTGATGGTTCAACTTCTAGAGTGATGGTCTTACCAGTC 22857 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 | ||| || ||||| | ||||| Sbjct 22858 AAAGTTTTGACAAAGATTTGCAT 22880 Score = 116 bits (128), Expect = 9e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || || || || ||||| || ||||| || || | || || || |||||| Sbjct 23125 AGTACAAGATGGAGTGTTGATTCTTTCTGAATGTTGTAGTCAGATAGTGTTCTACCATCT 23184 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || || || || || ||||| | | |||||||| || |||| ||| || |||||| Sbjct 23185 TCAAGTTGTTTTCCAGCAAAGATCAATCTCTGTTGGTCTGGTGGAATTCCCTCTTTGTCC 23244 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || ||| || || || || || || || |||||| || |||||||| ||| Sbjct 23245 TGGATTTTAGCTTTGACATTCTCAATTGTATCTGATGGTTCAACTTCTAGAGTGATGGTC 23304 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | ||| || || || | ||||| Sbjct 23305 TTGCCAGTCAAAGTTTTGACGAAGATTTGCAT 23336 Score = 104 bits (114), Expect = 5e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || || || || ||||| || || || || || | || || || |||||| Sbjct 22897 AGTACAAGATGGAGTGTTGATTCTTTCTGAATATTGTAGTCAGATAGTGTTCTACCATCT 22956 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || || || || || ||||| | | |||||||| || |||| ||| || |||||| Sbjct 22957 TCAAGTTGTTTTCCGGCAAAGATCAATCTCTGTTGGTCTGGTGGAATTCCCTCTTTGTCC 23016 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || ||| || || || || || || || |||||| || || ||||| ||| Sbjct 23017 TGGATTTTAGCTTTGACATTCTCAATTGTATCTGATGGTTCAACTTCTAGCGTGATGGTC 23076 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | || || || || | ||||| Sbjct 23077 TTGCCAGTCAATGTTTTGACGAAGATTTGCAT 23108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158044469023145