Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Modiolus_20philippinarum_20[genbank_20GCA_5F002080025.1_202017-04- 05] 74,573 sequences; 2,629,556,424 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq9175 145 2e-29 seq35982 138 3e-27 seq33293 104 6e-17 >seq9175 Length=65522 Score = 145 bits (160), Expect = 2e-29 Identities = 156/204 (76%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 ||||| ||||||||||| || | ||||| |||| || ||||| |||||||| || || Sbjct 22678 TGGAGTGTGGATTCTTTCTGAATGTTGTAGTCGGACAGTGTTCTACCATCTTCAAGTTGT 22737 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || ||||| ||||| | || |||||||| || ||||| || || ||||| ||||| ||| Sbjct 22738 TTTCCAGCAAAGATCAATCTCTGTTGGTCTGGTGGAATTCCCTCTTTGTCCTGGAT-TTT 22796 Query 225631 TGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 || || ||| ||| || || ||||| | ||| || |||| ||||| ||||| || || Sbjct 22797 AGCTTTGACATTTTCAATTGTATCTGATGGTTCAACTTCTAGAGTGATGGTCTTACCAGT 22856 Query 225690 CAAAGTTTTTATGAACACTTGCAT 225713 ||||||||| | || | |||||| Sbjct 22857 CAAAGTTTTGACAAAGATTTGCAT 22880 Score = 143 bits (158), Expect = 6e-29 Identities = 161/213 (76%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || ||||| ||||| || |||||||| || | ||||| || | | ||||| |||||| Sbjct 23125 AGTACAAGATGGAGTGTTGATTCTTTCTGAATGTTGTAGTCAGATAGTGTTCTACCATCT 23184 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || || || ||||| ||||| | || |||||||| || ||||| || || ||||| Sbjct 23185 TCAAGTTGTTTTCCAGCAAAGATCAATCTCTGTTGGTCTGGTGGAATTCCCTCTTTGTCC 23244 Query 225622 TGGATCTTTTGCTTC-ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||| ||| |||| ||| || || || ||||| | ||| || |||| ||||| || Sbjct 23245 TGGAT-TTTAGCTTTGACATTCTCAATTGTATCTGATGGTTCAACTTCTAGAGTGATGGT 23303 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||| ||||||||||| | ||| | |||||| Sbjct 23304 CTTGCCAGTCAAAGTTTTGACGAAGATTTGCAT 23336 >seq35982 Length=112201 Score = 138 bits (152), Expect = 3e-27 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| ||| | || || ||||| ||||| |||| ||||| || | ||| || | || Sbjct 104863 TCTCAAGACCAAATGAAGTGTGGACTCTTTCTGGATGTTGTAGTCCGACAATGTACGACC 104804 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||||| || || ||||| |||||||| ||||| || || || ||||||||||| || Sbjct 104803 ATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGAGGAATACCTTCTTT 104744 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 ||||||||||| || || |||||| |||||||| | |||||| || | || || Sbjct 104743 ATCTTGGATCTTGGCTTTTACGTTTTCGATAGTGTCTGATGGTTCCACTTCAAGTGTTAT 104684 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || || | ||||| | ||| | |||||| Sbjct 104683 TGTTTTTCCAGTAAGTGTTTTGACGAAAATTTGCAT 104648 Score = 138 bits (152), Expect = 3e-27 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| ||| | || || || || ||||| |||| |||||||| | ||| || | || Sbjct 105319 TCTCAAGACCAAATGAAGTGTCGACTCTTTCTGGATGTTGTAATCTGACAATGTACGACC 105260 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||||| || || ||||| |||||||| ||||| || || || ||||||||||| || Sbjct 105259 ATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGAGGAATACCTTCTTT 105200 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 ||||||||||| || || |||||| |||||||| | |||||| || | || || Sbjct 105199 ATCTTGGATCTTAGCTTTTACGTTTTCGATAGTGTCTGATGGTTCCACTTCAAGTGTTAT 105140 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || || | ||||| | ||| | |||||| Sbjct 105139 TGTTTTTCCGGTAAGTGTTTTGACGAAAATTTGCAT 105104 Score = 134 bits (148), Expect = 3e-26 Identities = 160/217 (74%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| ||| | || || || || ||||| || | ||||| || | ||| || | || Sbjct 104635 TCTCAAGACCAAATGAAGTGTTGACTCTTTCTGAATGTTGTAGTCTGACAATGTACGACC 104576 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||||| || || ||||| |||||||| ||||| || || || ||||||||||| || Sbjct 104575 ATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGAGGAATACCTTCTTT 104516 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 ||||||||||| || || |||||| ||||| || | |||||| || | || || Sbjct 104515 ATCTTGGATCTTAGCTTTTACGTTTTCGATAGTGTCAGATGGTTCCACTTCCAGAGTAAT 104456 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || || ||||||||||| | || | ||||||| Sbjct 104455 TGTTTTTCCTGTCAAAGTTTTGACAAAAATTTGCATT 104419 Score = 127 bits (140), Expect = 5e-24 Identities = 160/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| ||| | || || ||||| ||||| |||| || ||||| | ||| || | || Sbjct 105091 TCTCAAGACCAAATGAAGCGTGGACTCTTTCTGGATGTTATAATCCGACAATGTACGACC 105032 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||||| || || ||||| |||||||| ||||| || || || ||||||||||| || Sbjct 105031 ATCTTCTAATTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGAGGAATACCTTCTTT 104972 Query 225618 GTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGA 225676 ||||| || ||| || || || |||||| ||||| || | |||||| || | || | Sbjct 104971 ATCTTGAAT-TTTAGCTTTTACGTTTTCGATAGTGTCAGATGGTTCCACTTCAAGTGTTA 104913 Query 225677 TCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 | || || || || | ||||| | ||| | |||||| Sbjct 104912 TTGTTTTTCCAGTAAGTGTTTTGACGAAAATTTGCAT 104876 Score = 109 bits (120), Expect = 1e-18 Identities = 133/179 (74%), Gaps = 2/179 (1%) Strand=Plus/Minus Query 225536 TGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTT 225595 |||| || | ||| || | |||||||||| || |||||||| |||||||| ||||| | Sbjct 105509 TGTAGTCTGACAACGTACGACCATCTTCTAATTGTTTCCCAGCAAAGATAAGACGTTGCT 105450 Query 225596 GGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCT 225654 | || || ||||||||||| || ||||| || ||| || || || |||||| ||||| Sbjct 105449 GATCTGGAGGAATACCTTCTTTATCTTGAAT-TTTAGCTTTTACGTTTTCGATAGTGTCA 105391 Query 225655 GAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || | |||||| || | || || || || || || | ||||| | ||| | |||||| Sbjct 105390 GATGGTTCCACTTCAAGTGTTATTGTTTTTCCTGTAAGTGTTTTGACGAAAATTTGCAT 105332 Score = 95.1 bits (104), Expect = 3e-14 Identities = 109/144 (76%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || || || || ||||| |||| ||||| || | ||| || | |||||||||| || Sbjct 105880 TGAAGGGTTGACTCTTTCTGGATGTTGTAGTCTGACAATGTACGACCATCTTCTAATTGT 105821 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || ||||| |||||||| ||||| || || || ||||||||||| || ||||| || ||| Sbjct 105820 TTACCAGCAAAGATAAGACGTTGCTGATCTGGAGGAATACCTTCTTTATCTTGAAT-TTT 105762 Query 225631 TGC-TTCACAGCTTCGATGGTGTC 225653 || || || |||||| ||||| Sbjct 105761 AGCTTTTACGTTTTCGATAGTGTC 105738 >seq33293 Length=170991 Score = 104 bits (114), Expect = 6e-17 Identities = 86/105 (82%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530 || ||||| ||||| || || || || ||||| |||||||| ||||| || |||||||| Sbjct 49565 AAAATTTGCCCATCTGTGATTGAAATGACATTAGTAGGGATGTAAGCTGATACATCACCA 49624 Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCA 4575 || |||||||||| || || | ||||||||||||||||||||| Sbjct 49625 GCCTGTGTTTCGATGACTGGAAGAGCTGTTAGTGATCCACCACCA 49669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1191391776313662