Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Modiolus_20philippinarum_20[genbank_20GCA_5F002080025.1_202017-04- 05] 74,573 sequences; 2,629,556,424 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq11254 311 7e-80 seq45074 129 5e-25 >seq11254 Length=169933 Score = 311 bits (344), Expect = 7e-80 Identities = 496/709 (70%), Gaps = 7/709 (1%) Strand=Plus/Minus Query 4277 CTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAACGGATT 4336 |||||| || || || ||||||||||| | || || || ||||| |||| ||||||||| Sbjct 70935 CTTTTCAAAAAAGTTGGTTTTGCCTTCCAGGGAGATGTTCTCCATGAAATTAAACGGATT 70876 Query 4337 AGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAATCGGTCAGCTACAAATTC 4396 | | ||||| |||||||| | || | | || |||| || ||| ||||||||||| Sbjct 70875 TGACGAATTGTACAGTTTTTCATAATTCAAATCTGTCAGCAGTCTGTCGGCTACAAATTC 70816 Query 4397 TATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACAGGTAGCGCGTATGT 4456 || ||||| | ||| | | ||| |||||||| | | | || |||| ||| | || Sbjct 70815 AATGTACTGCCACATCATGGTGTTGTTCATTCCAATCAGTTTGACGGGTAACGCTTCCGT 70756 Query 4457 CAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTATCTTTAGA 4516 |||||||||||||||||| ||||| || | | || || | || ||| | || Sbjct 70755 CAAAAACTCTTGTTCTATCAAAACGGCATCCGACACGATCTCGTGTACCCTATTCTGCGA 70696 Query 4517 TGGTTTATTTACTAAGTATCCA---AACAATAAACACGCAAAATCACAATGCAAACCTTC 4573 ||||||| | || | || | || || ||||| | | | || |||||||| Sbjct 70695 GGGTTTATGCTTCAGGTGGTCGTTGAAAAGTAGGCAGGCAAATTGATAGTGTAAACCTTC 70636 Query 4574 GTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTAAG 4633 || || || || || ||||| |||||||| || ||||| | ||||| || || | Sbjct 70635 ATCCCTACTGATTAGCTCGTTGCTGAACGTTAAACCCGGCATGAGACCTCGTTTCTTTAA 70576 Query 4634 CCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCTAC 4693 |||||| || || ||||| ||||||||||| ||||||||||| ||||||| |||| Sbjct 70575 CCAAAAAATTGCAGCAAAACTACCAGAAAAGAAGATGCCTTCTACCACGGCAAATGCTAG 70516 Query 4694 TAATCGGGACCCGAACGAGCTGGCTTTG--TCTTTAATCCATTTTAATGCCCAGTTAGCT 4751 | ||| | || | | | | || | ||||| |||| ||||| || || Sbjct 70515 CAGTCGCACGGCAAA--ATTAGAATCAGAATCGTGTATCCAATTTATGGCCCATTTGGCC 70458 Query 4752 TTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATTTACTTTTTTCAAATGGG 4811 || |||| |||||| || || || | ||| ||||| | || | ||| | || Sbjct 70457 TTCTTCTGAACGCAAGGTATGGTTTCTATTGCGTTTAGCAACTGGTCTTTACGTACAGGA 70398 Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871 |||| |||| |||| ||||| | | ||| ||||||||||| ||||| ||||| || ||| Sbjct 70397 TCTTTAATAAAAGTATCTATCATCAAGCTGTACATTTCAGAGTGTATGTTTTCCATGGCA 70338 Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCT 4931 ||||||||||||||||| || | ||||||| | || ||||| |||||||| || | | Sbjct 70337 ATCTGAAATCCGTAAAAAGATTTGGCTTCTGGAAACTGGACTTCATTACAAAACCTCTGT 70278 Query 4932 ACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980 ||| ||||||||| || || ||||| || || ||||| || |||| || Sbjct 70277 GCTAGGTTTTCGTTAACGATGCCGTCGCTTGCAGCAAAGAAAGCCAGAA 70229 >seq45074 Length=316632 Score = 129 bits (142), Expect = 5e-25 Identities = 146/196 (74%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 4938 TTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTAC 4997 ||||| ||||| || || ||||| || ||||| || ||||||||||| || || || | Sbjct 225515 TTTTCATTTACAATTCCATCACTAGCAGCAAAGAATGCCAAAACATGGGAAATGAAATGT 225574 Query 4998 TGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCA 5057 || ||| ||| | ||| |||||| ||||||||| | |||||||||||||| Sbjct 225575 CTCTCTTCATCCTTTAAAGTTTCCCAGTGCACCAAATCTTTTGACAAATCAACTTCTTCT 225634 Query 5058 ACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATCAGGATACTGAATC 5117 |||||||||| || ||||| || || |||||||| |||||| || |||||||||| Sbjct 225635 GCAGTCCAAAAAGAGGCTTCTGCCTTCTTGTACATTTGCCAAATGTCGTGATACTGAATT 225694 Query 5118 GGAAGTATGACAAATC 5133 || | | ||||||| Sbjct 225695 GGGAAGACAACAAATC 225710 Score = 91.5 bits (100), Expect = 1e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 4809 GGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATA 4868 ||||||| ||| || ||||| || ||||| || ||||||||||| || |||||||| || Sbjct 224454 GGGTCTTTAATGTAGGTGTCAATAAGTAGACTGTACATTTCAGAGTGGATATTTTCCATG 224513 Query 4869 GCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTT 4928 || || || || || || || ||||| ||||| || | || ||||| |||| || || Sbjct 224514 GCTATTTGGAAGCCATAGAAACATCTTGCTTCAGTAGCCTGCACTTCCTTACTGAAATTT 224573 Query 4929 TCTAC 4933 || || Sbjct 224574 TCAAC 224578 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 4380 CGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTC 4439 || || |||||||||||||||||||| |||| | | ||| || ||||| || || | Sbjct 221305 CGATCGGCTACAAATTCTATATACTGTTTCATTAATGTGCAATTCATTCCTATCAAATTG 221364 Query 4440 ACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCT 4499 |||||||| | ||| | || | ||||| || ||| || ||| ||||||| || Sbjct 221365 CATGGTAGCGCTTCTGTAAGGAATTTCTGTTCAATTTCTACTGCATCTTTGATTATTTCA 221424 Query 4500 TTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCA 4559 | | | | |||| || |||||| ||||| | | ||| |||||| ||||| ||| Sbjct 221425 TACACTCTGTCTTGAGTTGGTTTCTTTACAAGATGATTGTACATTAAACAAGCAAAGTCA 221484 Query 4560 CAATGCAAACC 4570 ||||| | ||| Sbjct 221485 CAATGGAGACC 221495 Score = 82.4 bits (90), Expect = 7e-11 Identities = 153/223 (69%), Gaps = 4/223 (2%) Strand=Plus/Plus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || || || || || ||||| ||| || || | || ||||| | |||| |||||| Sbjct 222982 TCATCCCTACTGATAAGTTCATTACTGAAGGTAAGACCAGGCATAATTCCTCGCTTTTTG 223041 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 |||||||||||||| ||||| ||||| || ||||| ||||| || || ||||| || Sbjct 223042 AGCCAAAATATAGCTGCAAAACTACCAGAGAAAAATATCCCTTCAACTGCTGCAAATGCC 223101 Query 4692 ACTAATCGGGACCCGAACGAGCTG--GCTTTGTCTTTAATCCATTTTAATGCCCAGTTAG 4749 || | || | | | ||||| ||| || || |||||||| | ||||| | | Sbjct 223102 ACAACTC--TCTCTGCATAAGCTGCATTTTTTTCATTTATCCATTTCAGAGCCCAATCTG 223159 Query 4750 CTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAA 4792 |||| | || || || || ||||| | || || || || || Sbjct 223160 CTTTCTCTTTTACACATGGCATTGTTTCAATGGCATTGAACAA 223202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426661472367809