Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Modiolus_20philippinarum_20[genbank_20GCA_5F002080025.1_202017-04- 05] 74,573 sequences; 2,629,556,424 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq11254 268 1e-66 seq45074 134 2e-26 seq66969 118 1e-21 seq36930 84.2 3e-11 >seq11254 Length=169933 Score = 268 bits (296), Expect = 1e-66 Identities = 510/740 (69%), Gaps = 16/740 (2%) Strand=Plus/Minus Query 47837 CATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTC 47896 ||| || ||||| |||||||||| ||| || | || || ||||| || ||||||||||| Sbjct 70968 CATCACCCCCATCTTTTGATATTGACCGACCCTCTTTTCAAAAAAGTTGGTTTTGCCTTC 70909 Query 47897 CAATGATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttA-AATC 47955 || || || || ||||| |||| ||| ||||| | ||| || | ||||| | ||| Sbjct 70908 CAGGGAGATGTTCTCCATGAAATTAAACGGATTTGACGAATTGTACAGTTTTTCATAATT 70849 Query 47956 CTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAAT 48015 | ||| ||| | |||||| || || || ||||| || || |||||| | Sbjct 70848 CAAAT-CTGTCAGCAGTCTGTCGGCTACAAATTCAATGTACTGCCACATCATGGTGTTGT 70790 Query 48016 TCATTCCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAG 48075 ||||||| || ||||| || |||| || ||||| | |||||||||||| || || | Sbjct 70789 TCATTCCAATCAGTTTGACGGGTAACGCTTCCGTCAAAAACTCTTGTTCTATCAAAACGG 70730 Query 48076 CATCC---ACTATTATCGATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTT--- 48129 ||||| || || ||| ||| ||| | | || ||| || | || || | Sbjct 70729 CATCCGACACGATC-TCG-TGT-ACCCTATTCTGCGAGGGTTTATGCTTCAGGTGGTCGT 70673 Query 48130 TAAACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAG 48189 | || | || || ||||| | | | || | ||||||||| ||||| |||| ||||| Sbjct 70672 TGAAAAGTAGGCAGGCAAATTGATAGTGTAAACCTTCATCCCTACTGATTAGCTCGTTGC 70613 Query 48190 AAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATC 48249 || || | ||| ||||| || || ||||| || | |||||| ||||| || ||| | Sbjct 70612 TGAACGTTAAACCCGGCATGAGACCTCGTTTCTTTAACCAAAAAATTGCAGCAAAACTAC 70553 Query 48250 CAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTT 48309 |||||||||| ||||||||||| | |||||||| |||| | | | || | | | Sbjct 70552 CAGAAAAGAAGATGCCTTCTACCACGGCAAATGCTAGCAGTCGCACGGCAAAATTAGAAT 70493 Query 48310 CG---TTGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTT 48366 | | ||||||||| | ||||| | |||||||||| || ||||| || |||| Sbjct 70492 CAGAATCGTGTATCCAATTTATGGCCCATTTGGCCTTCTTCTGAACGCAAGGTATGGTTT 70433 Query 48367 CTATAGCATTAAAGAGAAAGtttttttCATTGCT-ATCTTTAACGTAAGTATCTATTAAA 48425 |||| || || | | | | | ||| | | |||||||| |||||||||| | Sbjct 70432 CTATTGCGTTTAGCA-ACTGGTCTTTACGTACAGGATCTTTAATAAAAGTATCTATCATC 70374 Query 48426 AGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTC 48485 | || |||||||| ||||| || ||||| || || |||||||||||||||||| || | Sbjct 70373 AAGCTGTACATTTCAGAGTGTATGTTTTCCATGGCAATCTGAAATCCGTAAAAAGATTTG 70314 Query 48486 GCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCA 48545 ||||||| | ||| || || ||||||| | | || | || || || || || || Sbjct 70313 GCTTCTGGAAACTGGACTTCATTACAAAACCTCTGTGCTAGGTTTTCGTTAACGATGCCG 70254 Query 48546 TCACTAGCAGCAAAAAATGC 48565 || || |||||||| || || Sbjct 70253 TCGCTTGCAGCAAAGAAAGC 70234 >seq45074 Length=316632 Score = 134 bits (148), Expect = 2e-26 Identities = 162/218 (74%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 ||||| ||||| || | ||| ||| || || ||||| ||||| | ||| || |||||| Sbjct 222982 TCATCCCTACTGATAAGTTCATTACTGAAGGTAAGACCAGGCATAATTCCTCGCTTTTTG 223041 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCG 48284 ||||||||||| || || ||| ||||| || ||||| ||||| || || |||||||| Sbjct 223042 AGCCAAAATATAGCTGCAAAACTACCAGAGAAAAATATCCCTTCAACTGCTGCAAATGCC 223101 Query 48285 GTAAGTCTCTCTCCGTAA-CTGGCTTCGTT--GTGTATCCACCGTTGTGCCCAATCAGCC 48341 || ||||||| | ||| ||| || || | |||||| | |||||||| || Sbjct 223102 ACAACTCTCTCTGCATAAGCTGCATTTTTTTCATTTATCCATTTCAGAGCCCAATCTGCT 223161 Query 48342 TTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 48379 |||| |||||||| ||||||||||| || ||||| || Sbjct 223162 TTCTCTTTTACACATGGCATTGTTTCAATGGCATTGAA 223199 Score = 96.9 bits (106), Expect = 5e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 47834 AGACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCC 47893 |||||| || ||||| ||||||||||| || || | || || ||||| || ||||| || Sbjct 220487 AGACATTACACCCATCTTTTGATATTCTCCAACTCTCTTTTCAAAAAAGTTCGTTTTTCC 220546 Query 47894 TTCCAATGATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAt 47944 ||||| ||| || | |||||||||||||||||| || | |||| ||||| Sbjct 220547 TTCCAGTGAAATCTGTTCCATAAAATCAAATGGGTTTTCCACATTGTAAAT 220597 >seq66969 Length=194959 Score = 118 bits (130), Expect = 1e-21 Identities = 107/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 || ||||| |||||||||||||| | || || |||||||| ||||| | ||| | |||| Sbjct 30637 TGGAATTCCCCAGACAATACTCTTCTGGTATATATATTACTTGTATAGGCTTCTATAGAT 30696 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 ||||| || || || ||||||||||||||||| |||||||| || || | || | || Sbjct 30697 TCATTATTGCCTAAGATTTGAGCAGTAGAAGCTGTTGGCATTGGAGCTAATAACAGGCTG 30756 Query 77247 TTTCTGAGACCATGT 77261 ||||| | ||||||| Sbjct 30757 TTTCTAACACCATGT 30771 Score = 116 bits (128), Expect = 5e-21 Identities = 127/169 (75%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908 |||| | || |||||||||||||| ||||| ||| | || || ||||||||||||| Sbjct 26499 TCCAGGCATAAAAATGCATGCTTGTTAGTTTTCCGTAATTTGGTTCAGCTATATGAATAT 26558 Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968 ||| |||||||| ||||| || || |||||||| || || ||||| || || | ||| Sbjct 26559 TCAGAGACTGACTCTGATCAATAAATGCTCCTCTGTCTGCAGCCATCTTAATTACAGTCC 26618 Query 76969 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGG 77017 | || | ||| ||||| | ||||||| | | || || | || |||||| Sbjct 26619 TCTGTGAAATCTCCCACACAGTTTTGTACAATTTCTTCAAATTATCTGG 26667 >seq36930 Length=140287 Score = 84.2 bits (92), Expect = 3e-11 Identities = 110/150 (73%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 171834 TTCCCGATTTTGTAGTAGAGGATCCTAAACAATCTCCTATATGGGAGATTTCAGGAGCTG 171893 |||| || ||||| || | ||||| || |||||| | ||||| || ||||| | Sbjct 114766 TTCCAGACTTTGTTGTGAAAGATCCCAAGACATCTCCAGTGTGGGAAATAATGGGAGCAG 114825 Query 171894 AGTTCACATCATCCAAGT-CGCATACAGCAAATGGAATATCTATTAGATTTCCTAGATTC 171952 |||| | |||| | ||| | |||||||| |||| |||||||| |||||||| | | Sbjct 114826 AGTTTAG-TCATTCCAGTTCACATACAGCTGATGGGATATCTATAAGATTTCCACGTATT 114884 Query 171953 ACTAGGATTAGAGACGATAAAACATGGAAA 171982 ||| |||||||||||||||||||| || Sbjct 114885 GCTAAAGTTAGAGACGATAAAACATGGGAA 114914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694021255794720