Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Modiolus_20philippinarum_20[genbank_20GCA_5F002080025.1_202017-04- 05] 74,573 sequences; 2,629,556,424 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq11254 279 7e-70 seq45074 152 7e-32 seq66969 132 7e-26 >seq11254 Length=169933 Score = 279 bits (308), Expect = 7e-70 Identities = 511/742 (69%), Gaps = 10/742 (1%) Strand=Plus/Minus Query 46323 TGACATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCC 46382 || ||| || ||||| ||||| |||| ||| || | || || ||||| || |||||||| Sbjct 70971 TGTCATCACCCCCATCTTTTGATATTGACCGACCCTCTTTTCAAAAAAGTTGGTTTTGCC 70912 Query 46383 TTCCAATGATATATTTTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttA-A 46441 ||||| || || || ||||| |||| ||||||||| | ||| || | ||||| | | Sbjct 70911 TTCCAGGGAGATGTTCTCCATGAAATTAAACGGATTTGACGAATTGTACAGTTTTTCATA 70852 Query 46442 ATCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCAC 46501 || | ||| ||| | |||||| || || || ||||| || ||| |||||| Sbjct 70851 ATTCAAAT-CTGTCAGCAGTCTGTCGGCTACAAATTCAATGTACTGCCACATCATGGTGT 70793 Query 46502 AATTCATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGA 46561 |||||||| || |||||||| |||| || ||||| | |||||||||||| || | Sbjct 70792 TGTTCATTCCAATCAGTTTGACGGGTAACGCTTCCGTCAAAAACTCTTGTTCTATCAAAA 70733 Query 46562 CAGCATCCGATATTATCGATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTT--- 46618 | |||||||| | ||| ||| | | || ||| |||| ||| || | Sbjct 70732 CGGCATCCGACACGATCTCGTGTACCCTATTCTGCGAGGGTTTATGCTTCAGGTGGTCGT 70673 Query 46619 TAAACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAG 46678 | || | || || ||||| | | | || | |||||||| ||||| |||| ||||| Sbjct 70672 TGAAAAGTAGGCAGGCAAATTGATAGTGTAAACCTTCATCCCTACTGATTAGCTCGTTGC 70613 Query 46679 AAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATC 46738 || || | || ||||| || || || || || | |||||| || || || ||| | Sbjct 70612 TGAACGTTAAACCCGGCATGAGACCTCGTTTCTTTAACCAAAAAATTGCAGCAAAACTAC 70553 Query 46739 CAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCAT 46798 |||||||||| ||||||||||| | || ||||| | |||| | | | || | | || Sbjct 70552 CAGAAAAGAAGATGCCTTCTACCACGGCAAATGCTAGCAGTCGCACGGCAAAATTAGAAT 70493 Query 46799 CATTAT---GAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTT 46855 || || | ||||| || ||||| | ||||| |||| || ||||| || |||| Sbjct 70492 CAGAATCGTGTATCCAATTTATGGCCCATTTGGCCTTCTTCTGAACGCAAGGTATGGTTT 70433 Query 46856 CTATAGCATTAAAGAGAAAGtttttttCAT-CACTATCTTTAACATATGTATCTATTAAA 46914 |||| || || | | | | | ||| | | || |||||||| | | |||||||| | Sbjct 70432 CTATTGCGTTTAGCA-ACTGGTCTTTACGTACAGGATCTTTAATAAAAGTATCTATCATC 70374 Query 46915 AGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTT 46974 | || |||||||| || || |||||||| || || |||||||||||||||||| || | Sbjct 70373 AAGCTGTACATTTCAGAGTGTATGTTTTCCATGGCAATCTGAAATCCGTAAAAAGATTTG 70314 Query 46975 GCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCA 47034 ||||| | || ||| || || ||||||| | | | | || || || || || || Sbjct 70313 GCTTCTGGAAACTGGACTTCATTACAAAACCTCTGTGCTAGGTTTTCGTTAACGATGCCG 70254 Query 47035 TCACTAGCAGCAAAAAATGCCA 47056 || || |||||||| || |||| Sbjct 70253 TCGCTTGCAGCAAAGAAAGCCA 70232 >seq45074 Length=316632 Score = 152 bits (168), Expect = 7e-32 Identities = 165/218 (76%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 ||||| ||||| || | ||| ||| || || || |||||||| | ||| ||||||||| Sbjct 222982 TCATCCCTACTGATAAGTTCATTACTGAAGGTAAGACCAGGCATAATTCCTCGCTTTTTG 223041 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 |||||||||||||| || ||| ||||| || ||||| ||||| || || || ||||| Sbjct 223042 AGCCAAAATATAGCTGCAAAACTACCAGAGAAAAATATCCCTTCAACTGCTGCAAATGCC 223101 Query 46774 ACAAGTCTCTCTCCGTAACTGGCATCATT---ATGAATCCACCTTTGAGCCCAATCAGCC 46830 |||| ||||||| | ||| |||| || || ||||| | |||||||||| || Sbjct 223102 ACAACTCTCTCTGCATAAGCTGCATTTTTTTCATTTATCCATTTCAGAGCCCAATCTGCT 223161 Query 46831 TTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 46868 || | |||||||| ||||||||||| || ||||| || Sbjct 223162 TTCTCTTTTACACATGGCATTGTTTCAATGGCATTGAA 223199 Score = 114 bits (126), Expect = 2e-20 Identities = 149/203 (73%), Gaps = 6/203 (3%) Strand=Plus/Plus Query 47013 CAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAA 47072 || ||| ||||| || |||||||||||||||||||| |||||||| ||||| ||| || Sbjct 225511 CAGATTTTCATTTACAATTCCATCACTAGCAGCAAAGAATGCCAAAACATGGGAAATGAA 225570 Query 47073 ATAT---TTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTAC 47129 || | | |||||| | |||| | ||||| | ||||||||| | ||| || Sbjct 225571 ATGTCTCTCTTCATC-CTTTAAAGTT--TCCCAGTGCACCAAATCTTTTGACAAATCAAC 225627 Query 47130 TTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACGATA 47189 |||||| || ||||| || || || ||||| || || ||||| | ||| || || |||| Sbjct 225628 TTCTTCTGCAGTCCAAAAAGAGGCTTCTGCCTTCTTGTACATTTGCCAAATGTCGTGATA 225687 Query 47190 TTGGATCGGAAAAATAACAAATC 47212 || || || || | |||||||| Sbjct 225688 CTGAATTGGGAAGACAACAAATC 225710 Score = 86.0 bits (94), Expect = 9e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 46324 GACATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCT 46383 ||||| || ||||| ||||| ||||| || || | || || ||||| || ||||| ||| Sbjct 220488 GACATTACACCCATCTTTTGATATTCTCCAACTCTCTTTTCAAAAAAGTTCGTTTTTCCT 220547 Query 46384 TCCAATGATATATTTTCCATAAAATCAAACGGATTAGTAACATTATAAAt 46433 |||| ||| || | ||||||||||||||| || || ||||| ||||| Sbjct 220548 TCCAGTGAAATCTGTTCCATAAAATCAAATGGGTTTTCCACATTGTAAAT 220597 >seq66969 Length=194959 Score = 132 bits (146), Expect = 7e-26 Identities = 175/241 (73%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 76507 TGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGG 76566 |||||| || |||||| || || |||||| ||| | |||||||||||||||| || Sbjct 45358 TGTATACAAATTTTCAAACTCTTCCCCCCAACAATCTTGTAAACCAGGACATTCATGTGG 45417 Query 76567 ACACATCAATGACCACTCACCAT--CTTCCTTAACCCGTTTCATAAAGAGATCAGGTATC 76624 |||||||| | |||||| |||| ||| || || || |||||||| | || || ||| Sbjct 45418 ACACATCAGAGTCCACTCTCCATTGCTTTCT--ACACGCTTCATAAACAAGTCTGGAATC 45475 Query 76625 CATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGA 76684 || | ||| |||||||| | | ||| ||||| |||||||| ||||| ||| | Sbjct 45476 CACATGGCATAGAATAGATCCCTAGCTCTGTTCTCTTCTTTTCCTGTGTTCTTCTTACAA 45535 Query 76685 TCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGT 76744 || ||||| || | ||||||| |||||| || || || || || || | | | || ||| Sbjct 45536 TCAAGGAAATCAAATATATCAGCATGCCAAGGCTCCAGGTACATAGCAAAAGCTCCTGGT 45595 Query 76745 C 76745 | Sbjct 45596 C 45596 Score = 120 bits (132), Expect = 4e-22 Identities = 128/169 (76%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 75444 TCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATAT 75503 |||| | || |||||||||||||||||||| ||| | || || ||||||||||||| Sbjct 26499 TCCAGGCATAAAAATGCATGCTTGTTAGTTTTCCGTAATTTGGTTCAGCTATATGAATAT 26558 Query 75504 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 75563 ||| |||||||| ||||| || || |||||||| || || ||||| || || | ||| Sbjct 26559 TCAGAGACTGACTCTGATCAATAAATGCTCCTCTGTCTGCAGCCATCTTAATTACAGTCC 26618 Query 75564 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGG 75612 | || | ||| ||||| | ||||||| | | || || | || |||||| Sbjct 26619 TCTGTGAAATCTCCCACACAGTTTTGTACAATTTCTTCAAATTATCTGG 26667 Score = 113 bits (124), Expect = 6e-20 Identities = 106/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 || ||||| |||||||||||||||| || || |||||||| ||||| | ||| | |||| Sbjct 30637 TGGAATTCCCCAGACAATACTCTTCTGGTATATATATTACTTGTATAGGCTTCTATAGAT 30696 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 ||||| || || || ||||||||||| ||||| || ||||| || || | || | || Sbjct 30697 TCATTATTGCCTAAGATTTGAGCAGTAGAAGCTGTTGGCATTGGAGCTAATAACAGGCTG 30756 Query 75842 TTTCTGAGACCATGT 75856 ||||| | ||||||| Sbjct 30757 TTTCTAACACCATGT 30771 Score = 87.8 bits (96), Expect = 3e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 75950 GATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAAC 76009 ||||| | ||| || || || | ||| || || || ||||| ||||| |||||||| Sbjct 38583 GATCCTTCATAGGTCTCATATGGCCCTAATTTCTCTGCAAGTTCACAACTGGCCTCTAAT 38642 Query 76010 GCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCA 76069 ||| | | ||||| || || || | || || || | || |||| ||| ||| Sbjct 38643 GCAGCAAAGTAAATGCAGTCAAATATTTCTTTGTTTAGTTTCTGGGCTTGCTCACTCTCA 38702 Query 76070 AAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGT 76129 |||||| | | | ||| || ||||| || |||||||| ||||| || ||||||||| Sbjct 38703 AAAGGAAACCTCATTAAAATGAAAGCATCAGCAAGTCCCTGCACTCCTATTCCAATAGGT 38762 Query 76130 CTATGTCT 76137 |||||||| Sbjct 38763 CTATGTCT 38770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712269829287360