Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Modiolus_20philippinarum_20[genbank_20GCA_5F002080025.1_202017-04- 05] 74,573 sequences; 2,629,556,424 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq9175 163 6e-35 seq35982 158 3e-33 seq63802 87.8 4e-12 seq43241 86.0 1e-11 seq37902 86.0 1e-11 seq17018 86.0 1e-11 >seq9175 Length=65522 Score = 163 bits (180), Expect = 6e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| || || || || ||||| ||||| | || |||||| || ||||||||||||| Sbjct 23109 ACCTCCTCGGAGACGGAGTACAAGATGGAGTGTTGATTCTTTCTGAATGTTGTAGTCAGA 23168 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || | ||||| || |||||||| || ||||||||||| | |||||||| || Sbjct 23169 TAGTGTTCTACCATCTTCAAGTTGTTTTCCAGCAAAGATCAATCTCTGTTGGTCTGGTGG 23228 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||| ||||| ||||| || ||||| || | || || || || || | ||| || Sbjct 23229 AATTCCCTCTTTGTCCTGGATTTTAGCTTTGACATTCTCAATTGTATCTGATGGTTCAAC 23288 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| |||||||| ||||| || |||||||| || ||||| || ||||| Sbjct 23289 TTCTAGAGTGATGGTCTTGCCAGTCAAAGTTTTGACGAAGATTTGCAT 23336 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || || | ||| | ||| | ||| |||||| || ||||||||||| | Sbjct 22654 CCACCACGTAGACGCAATACTAAATGGAGTGTGGATTCTTTCTGAATGTTGTAGTCGGAC 22713 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || | ||||| || |||||||| || ||||||||||| | |||||||| ||| Sbjct 22714 AGTGTTCTACCATCTTCAAGTTGTTTTCCAGCAAAGATCAATCTCTGTTGGTCTGGTGGA 22773 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||| ||||| ||||| || ||||| || | || || || || || | ||| ||| Sbjct 22774 ATTCCCTCTTTGTCCTGGATTTTAGCTTTGACATTTTCAATTGTATCTGATGGTTCAACT 22833 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || |||||||| |||||||| |||||||| || || || || ||||| Sbjct 22834 TCTAGAGTGATGGTCTTACCAGTCAAAGTTTTGACAAAGATTTGCAT 22880 Score = 154 bits (170), Expect = 3e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| || || || || ||||| ||||| | || |||||| || || |||||||||| Sbjct 22881 ACCTCCTCGGAGACGGAGTACAAGATGGAGTGTTGATTCTTTCTGAATATTGTAGTCAGA 22940 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || | ||||| || |||||||| |||||||||||||| | |||||||| || Sbjct 22941 TAGTGTTCTACCATCTTCAAGTTGTTTTCCGGCAAAGATCAATCTCTGTTGGTCTGGTGG 23000 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||| ||||| ||||| || ||||| || | || || || || || | ||| || Sbjct 23001 AATTCCCTCTTTGTCCTGGATTTTAGCTTTGACATTCTCAATTGTATCTGATGGTTCAAC 23060 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| || ||||| ||||| || ||||| || || ||||| || ||||| Sbjct 23061 TTCTAGCGTGATGGTCTTGCCAGTCAATGTTTTGACGAAGATTTGCAT 23108 >seq35982 Length=112201 Score = 158 bits (174), Expect = 3e-33 Identities = 150/192 (78%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 ||||| || ||||||||||| | | || || ||||| |||| |||||| || |||||| Sbjct 104610 TCTTTCTGAATGTTGTAGTCTGACAATGTACGACCATCTTCTAATTGTTTACCAGCAAAG 104551 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || | |||||| || || |||||||| || || ||||||||||| ||||||||| | Sbjct 104550 ATAAGACGTTGCTGATCTGGAGGAATACCTTCTTTATCTTGGATCTTAGCTTTTACGTTT 104491 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 ||||||||||| || | ||| ||||| ||||| || || || || |||||||| || || Sbjct 104490 TCGATAGTGTCAGATGGTTCCACTTCCAGAGTAATTGTTTTTCCTGTCAAAGTTTTGACA 104431 Query 283089 AATATCTGCATT 283100 || || |||||| Sbjct 104430 AAAATTTGCATT 104419 Score = 147 bits (162), Expect = 5e-30 Identities = 147/191 (77%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 ||||| |||||||||||||| | | || || ||||| |||| |||||| || |||||| Sbjct 104382 TCTTTCTGGATGTTGTAGTCTGACAATGTACGACCATCTTCTAATTGTTTGCCAGCAAAG 104323 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || | |||||| || || ||||| ||||| || || ||||| || || ||||| | Sbjct 104322 ATAAGACGTTGCTGATCTGGAGGAATTCCCTCTTTATCCTGGATTTTGGCCTTTACATTT 104263 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 ||||||||||| |||| ||| ||||| || ||||| || || || |||| || || || Sbjct 104262 TCGATAGTGTCTGAAGGTTCTACTTCAAGGGTGATAGTTTTCCCTGTCAGTGTTTTCACA 104203 Query 283089 AATATCTGCAT 283099 ||||||||||| Sbjct 104202 AATATCTGCAT 104192 Score = 147 bits (162), Expect = 5e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 282891 ACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCT 282950 |||| ||| | ||| ||||| |||||||||||||| | | || || ||||| ||| Sbjct 104856 ACCAAATGAAGTGTGGACTCTTTCTGGATGTTGTAGTCCGACAATGTACGACCATCTTCT 104797 Query 282951 AGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGG 283010 | |||||| || |||||||| | |||||| || || |||||||| || || |||||| Sbjct 104796 AATTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGAGGAATACCTTCTTTATCTTGG 104737 Query 283011 ATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTA 283070 ||||| ||||||||| | ||||||||||| || | ||| ||||| || || || || || Sbjct 104736 ATCTTGGCTTTTACGTTTTCGATAGTGTCTGATGGTTCCACTTCAAGTGTTATTGTTTTT 104677 Query 283071 CCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || | || || ||||| || ||||| Sbjct 104676 CCAGTAAGTGTTTTGACGAAAATTTGCAT 104648 Score = 141 bits (156), Expect = 2e-28 Identities = 146/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 ||||| ||||||||||| || | | || || ||||| |||| |||||| || |||||| Sbjct 105294 TCTTTCTGGATGTTGTAATCTGACAATGTACGACCATCTTCTAATTGTTTACCAGCAAAG 105235 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || | |||||| || || |||||||| || || ||||||||||| ||||||||| | Sbjct 105234 ATAAGACGTTGCTGATCTGGAGGAATACCTTCTTTATCTTGGATCTTAGCTTTTACGTTT 105175 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 ||||||||||| || | ||| ||||| || || || || || || || | || || ||| Sbjct 105174 TCGATAGTGTCTGATGGTTCCACTTCAAGTGTTATTGTTTTTCCGGTAAGTGTTTTGACG 105115 Query 283089 AATATCTGCAT 283099 || || ||||| Sbjct 105114 AAAATTTGCAT 105104 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 282891 ACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCT 282950 |||| ||| | |||| ||||| |||||||| || || | | || || ||||| ||| Sbjct 105084 ACCAAATGAAGCGTGGACTCTTTCTGGATGTTATAATCCGACAATGTACGACCATCTTCT 105025 Query 282951 AGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGG 283010 | |||||| || |||||||| | |||||| || || |||||||| || || ||||| Sbjct 105024 AATTGTTTACCAGCAAAGATAAGACGTTGCTGATCTGGAGGAATACCTTCTTTATCTTGA 104965 Query 283011 ATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTA 283070 || || ||||||||| | ||||||||||| || | ||| ||||| || || || || || Sbjct 104964 ATTTTAGCTTTTACGTTTTCGATAGTGTCAGATGGTTCCACTTCAAGTGTTATTGTTTTT 104905 Query 283071 CCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || | || || ||||| || ||||| Sbjct 104904 CCAGTAAGTGTTTTGACGAAAATTTGCAT 104876 Score = 127 bits (140), Expect = 4e-24 Identities = 135/178 (76%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 282922 TGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTT 282981 ||||||| | | ||| || ||||| |||| ||||||||| |||||||| | |||||| | Sbjct 105509 TGTAGTCTGACAACGTACGACCATCTTCTAATTGTTTCCCAGCAAAGATAAGACGTTGCT 105450 Query 282982 GGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCG 283041 | || |||||||| || || ||||| || || ||||||||| | ||||||||||| | Sbjct 105449 GATCTGGAGGAATACCTTCTTTATCTTGAATTTTAGCTTTTACGTTTTCGATAGTGTCAG 105390 Query 283042 AAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | | ||| ||||| || || || || || || || | || || ||||| || ||||| Sbjct 105389 ATGGTTCCACTTCAAGTGTTATTGTTTTTCCTGTAAGTGTTTTGACGAAAATTTGCAT 105332 Score = 111 bits (122), Expect = 3e-19 Identities = 103/131 (79%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 ||||| |||||||||||||| | | || || ||||| |||| |||||| || |||||| Sbjct 105868 TCTTTCTGGATGTTGTAGTCTGACAATGTACGACCATCTTCTAATTGTTTACCAGCAAAG 105809 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || | |||||| || || |||||||| || || ||||| || || ||||||||| | Sbjct 105808 ATAAGACGTTGCTGATCTGGAGGAATACCTTCTTTATCTTGAATTTTAGCTTTTACGTTT 105749 Query 283029 TCGATAGTGTC 283039 ||||||||||| Sbjct 105748 TCGATAGTGTC 105738 >seq63802 Length=43549 Score = 87.8 bits (96), Expect = 4e-12 Identities = 95/125 (76%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 282995 ACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTC 283054 ||| ||||||||||| || ||||| || || | || || ||||| || | || || || Sbjct 12691 ACCTTCCTTGTCTTGAATTTTTGCCTTGACATTTTCAATGGTGTCAGATGGCTCCACCTC 12632 Query 283055 GAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTCA--TATACAAA 283112 || || || ||||| |||||||| ||||| || || |||||||| |||| | | |||| Sbjct 12631 TAGGGTAATGGTCTTCCCCGTCAATGTCTTCACAAAGATCTGCATCTTCAGTTCTGCAAA 12572 Query 283113 TATTT 283117 ||||| Sbjct 12571 TATTT 12567 >seq43241 Length=222632 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 134638 TAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 134694 >seq37902 Length=17816 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 682 TAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 738 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 7752 TAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 7808 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 8734 TAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 8790 >seq17018 Length=107603 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 12947 TAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 13003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1045739075694742