Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Modiolus_20philippinarum_20[genbank_20GCA_5F002080025.1_202017-04- 05] 74,573 sequences; 2,629,556,424 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq11254 255 6e-63 seq45074 102 8e-17 >seq11254 Length=169933 Score = 255 bits (282), Expect = 6e-63 Identities = 611/911 (67%), Gaps = 26/911 (3%) Strand=Plus/Minus Query 23156 ttttttAAAAATCTTCATCTAAAGTGAATTTCACTGCTTTATCACTATTCATAACACCCA 23215 |||||||||| |||||||||| || ||| | || |||| | ||| || |||| Sbjct 71011 TTTTTTAAAATTCTTCATCTATCGTAAATGTTCGTG---TATCTGT---CATCACCCCCA 70958 Query 23216 TTTTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTCTAATGATATAT 23275 | |||||||||| || || | |||| ||||| || || || || || | || || | Sbjct 70957 TCTTTTGATATTGACCGACCCTCTTTTCAAAAAAGTTGGTTTTGCCTTCCAGGGAGATGT 70898 Query 23276 TTTCCATAAAATCAAATGGATTAGAAGTATTATATACAGCTTTACATGAT--AATTCCTT 23333 | ||||| |||| ||| ||||| || | ||| || ||| ||| ||| || || || | Sbjct 70897 TCTCCATGAAATTAAACGGATTTGACGAATTGTA--CAGTTTTTCATAATTCAAATCTGT 70840 Query 23334 TAAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCATAGTTTATACCTAT 23393 | || || || |||||||||||||| || || ||||||| | ||| || || || Sbjct 70839 CAGCAGTCTGTCGGCTACAAATTCAATGTACTGCCACATCATGGTGTTGTTCATTCCAAT 70780 Query 23394 TAGTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAACAGCATCTTTAAT 23453 ||||| || || | ||| || || || || ||| || |||| ||||| | Sbjct 70779 CAGTTTGACGGGTAACGCTTCCGTCAAAAACTCTTGTTCTATCAAAACGGCATCCGACAC 70720 Query 23454 TATTT---GAACAATAACTTCTTCACTAGGTGGATATTTTAAATACT---TAAACAATAA 23507 || | | || || |||| | ||| || || | | | | || | || Sbjct 70719 GATCTCGTGTACCCTA--TTCTGCGAG-GGTTTATGCTTCAGGTGGTCGTTGAAAAGTAG 70663 Query 23508 ACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAA 23567 || ||||| | | | |||| |||||||||||||| || | || || || ||||| Sbjct 70662 GCAGGCAAATTGATAGTGTAAACCTTCATCCCTACTGATTAGCTCGTTGCTGAACGTTAA 70603 Query 23568 TCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAA 23627 || ||||| | |||||||| || | |||||| ||||||||||| || |||||||| Sbjct 70602 ACCCGGCATGAGACCTCGTTTCTTTAACCAAAAAATTGCAGCAAAACTACCAGAAAAGAA 70543 Query 23628 AATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCAGA 23687 || || || || | ||||| || | || || |||| | | || | |||| Sbjct 70542 GATGCCTTCTACCACGGCAAATGCTAGCAGTCGCACGGCAAAATTAGAATCAGAATCGTG 70483 Query 23688 AATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCTTT 23747 ||||| ||| | | ||| || |||||| | || || || ||||| ||||| || Sbjct 70482 TATCCAATTTATGGCCCATTTGGCCTTCTTCTGAACGCAAGGTATGGTTTCTATTGCGTT 70423 Query 23748 TAAGAGAAAAGTTTTTTCTT-CATTATCTGTTATATATGTATCAATTAGTAAACTATACA 23806 || | | || ||| | | || |||| | ||| | ||||| || | || || |||| Sbjct 70422 TAGCA-ACTGGTCTTTACGTACAGGATCTTTAATAAAAGTATCTATCATCAAGCTGTACA 70364 Query 23807 TTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACA 23866 ||||||| || || ||||| || ||||||||||| || |||||| || | ||||| | | Sbjct 70363 TTTCAGAGTGTATGTTTTCCATGGCAATCTGAAATCCGTAAAAAGATTTGGCTTCTGGAA 70304 Query 23867 ATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCAG 23926 | || || |||||| |||| || | |||| ||||||||||| || || || || |||| Sbjct 70303 ACTGGACTTCATTACAAAACCTCTGTGCTAGGTTTTCGTTAACGATGCCGTCGCTTGCAG 70244 Query 23927 CAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGAT-AATTTTTT---C 23982 |||||||||| |||| | || || | | ||| | | | | ||||| || | Sbjct 70243 CAAAGAAAGCCAGAATGGACGAAATGAACTTGCGTTC-TTTTTCGTTCAATTTGTTCTGC 70185 Query 23983 CAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTTGCCAAGGCA 24042 ||||| | || |||| ||| || ||||| || || || |||||| | |||| ||| Sbjct 70184 CAATCTTGAACATCTACTGACAAGTCAACCTCTTCTACAGTCCAATACGAAGCCAGGGCC 70125 Query 24043 CGCTTATACAT 24053 |||| ||||| Sbjct 70124 TGCTTGTACAT 70114 >seq45074 Length=316632 Score = 102 bits (112), Expect = 8e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23898 ATTTTCGTTAACAATACCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATG 23957 |||||| || ||||| |||||||||||||||||||| || | ||||| || ||||| Sbjct 225514 ATTTTCATTTACAATTCCATCACTAGCAGCAAAGAATGCCAAAACATGGGAAATGAAATG 225573 Query 23958 TCTTTCATCAGTTGATAATTTTTTCCAAT-CATTAATATCTTTTGATAAATCAACTTCAT 24016 ||| || ||| ||| ||| ||| | || || ||||||||| ||||||||||| | Sbjct 225574 TCTCTCTTCATCCTTTAAAGTTTCCCAGTGCACCAA-ATCTTTTGACAAATCAACTTCTT 225632 Query 24017 CAACTGTCCAAAAACTTGCCAAGGCACGCTTATACATTAGCCAAATATCATTATGTTGTA 24076 | | ||||||||| || || ||| |||||| ||||||| || | || || | Sbjct 225633 CTGCAGTCCAAAAAGAGGCTTCTGCCTTCTTGTACATTTGCCAAATGTCGTGATACTGAA 225692 Query 24077 TTGGAAATATTACGAATC 24094 |||| || | || |||| Sbjct 225693 TTGGGAAGACAACAAATC 225710 Score = 100 bits (110), Expect = 3e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 23533 TCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTA 23592 ||||||||||| || | ||||||| || || | || ||||| | |||||| ||||| Sbjct 222982 TCATCCCTACTGATAAGTTCATTACTGAAGGTAAGACCAGGCATAATTCCTCGCTTTTTG 223041 Query 23593 ATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCC 23652 | ||||||||| || ||||| || || || || || || ||||| || ||||| ||| Sbjct 223042 AGCCAAAATATAGCTGCAAAACTACCAGAGAAAAATATCCCTTCAACTGCTGCAAATGCC 223101 Query 23653 ACAAGACGTGTACCAAATGTTGCATTATAATCAGAAATCCAtttttttGTCCAATTAGCC 23712 |||| | || | | |||||| | ||| |||||||| | ||||| || Sbjct 223102 ACAACTCTCTCTGCATAAGCTGCATTTTTTTCATTTATCCATTTCAGAGCCCAATCTGCT 223161 Query 23713 TTCAATTTTACACACTCAATTGTTTCAATTGCTTTTAA 23750 ||| ||||||||| ||||||||||| || || || Sbjct 223162 TTCTCTTTTACACATGGCATTGTTTCAATGGCATTGAA 223199 Score = 84.2 bits (92), Expect = 2e-11 Identities = 73/91 (80%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 23773 TCTGTTATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGCA 23832 ||| | || || || ||||| |||| ||| ||||||||||| || |||||||| || || Sbjct 224457 TCTTTAATGTAGGTGTCAATAAGTAGACTGTACATTTCAGAGTGGATATTTTCCATGGCT 224516 Query 23833 ATCTGAAACCCATAAAAACATCTAGCTTCAG 23863 || || || ||||| |||||||| ||||||| Sbjct 224517 ATTTGGAAGCCATAGAAACATCTTGCTTCAG 224547 Score = 82.4 bits (90), Expect = 8e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 23205 CATAACACCCATTTTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTC 23264 ||| |||||||| ||||||||||| ||||| | |||| ||||| || || || || || Sbjct 220490 CATTACACCCATCTTTTGATATTCTCCAACTCTCTTTTCAAAAAAGTTCGTTTTTCCTTC 220549 Query 23265 TAATGATATATTTTCCATAAAATCAAATGGATT 23297 | ||| || | |||||||||||||||||| || Sbjct 220550 CAGTGAAATCTGTTCCATAAAATCAAATGGGTT 220582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521001888442200