Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Modiolus_20philippinarum_20[genbank_20GCA_5F002080025.1_202017-04- 05] 74,573 sequences; 2,629,556,424 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq35982 165 2e-35 seq9175 150 4e-31 seq39591 87.8 4e-12 >seq35982 Length=112201 Score = 165 bits (182), Expect = 2e-35 Identities = 168/219 (77%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| ||||| || || |||||||| || || || || |||||| |||||| Sbjct 105107 CAAATTTTCGTCAAAACACTTACCGGAAAAACAATAACACTTGAAGTGGAACCATCAGAC 105166 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| ||| ||||| || || |||||||| || ||||| || |||||| Sbjct 105167 ACTATCGAAAACGTAAAAGCTAAGATCCAAGATAAAGAAGGTATTCCTCCAGATCAGCAA 105226 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||| || || ||||| | |||||||| | || | | ||||| ||| || Sbjct 105227 CGTCTTATCTTTGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCAGATTACAACATC 105286 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || ||||| || ||||| ||| | || |||||| | ||| Sbjct 105287 CAGAAAGAGTCGACACTTCATTTGGTCTTGAGATTGAGA 105325 Score = 161 bits (178), Expect = 2e-34 Identities = 167/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| ||||| || || |||||||| || || || || |||||| |||||| Sbjct 104651 CAAATTTTCGTCAAAACACTTACTGGAAAAACAATAACACTTGAAGTGGAACCATCAGAC 104710 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| ||| ||||| || || |||||||| || ||||| || |||||| Sbjct 104711 ACTATCGAAAACGTAAAAGCCAAGATCCAAGATAAAGAAGGTATTCCTCCAGATCAGCAA 104770 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||| || || ||||| | |||||||| | || | | || || ||| || Sbjct 104771 CGTCTTATCTTTGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCGGACTACAACATC 104830 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || ||||| || ||||| ||| | || |||||| | ||| Sbjct 104831 CAGAAAGAGTCCACACTTCATTTGGTCTTGAGATTGAGA 104869 Score = 161 bits (178), Expect = 2e-34 Identities = 167/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| ||||| || || |||||||| || || || || |||||| || ||| Sbjct 104879 CAAATTTTCGTCAAAACACTTACTGGAAAAACAATAACACTTGAAGTGGAACCATCTGAC 104938 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| ||| || ||||| || |||||||| || ||||| || |||||| Sbjct 104939 ACTATCGAAAACGTAAAAGCTAAAATTCAAGATAAAGAAGGTATTCCTCCAGATCAGCAA 104998 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||| || || ||||| | |||||||| | || | | ||||||||| || Sbjct 104999 CGTCTTATCTTTGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCGGATTATAACATC 105058 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || ||||| || || || ||| | || |||||| | ||| Sbjct 105059 CAGAAAGAGTCCACGCTTCATTTGGTCTTGAGATTGAGA 105097 Score = 156 bits (172), Expect = 1e-32 Identities = 166/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || |||||| | ||||||||||| || || || || |||||| || ||| Sbjct 104423 CAAATTTTTGTCAAAACTTTGACAGGAAAAACAATTACTCTGGAAGTGGAACCATCTGAC 104482 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| ||| ||||| || || |||||||| || ||||| || |||||| Sbjct 104483 ACTATCGAAAACGTAAAAGCTAAGATCCAAGATAAAGAAGGTATTCCTCCAGATCAGCAA 104542 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||| || || ||||| | |||||||| | || | | || || ||| | Sbjct 104543 CGTCTTATCTTTGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCAGACTACAACATT 104602 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || ||||| |||||||| ||| | || |||||| | ||| Sbjct 104603 CAGAAAGAGTCAACACTTCATTTGGTCTTGAGATTGAGA 104641 Score = 136 bits (150), Expect = 1e-26 Identities = 123/155 (79%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| ||||| || ||||||||||| || || || || |||||| || ||| Sbjct 105335 CAAATTTTCGTCAAAACACTTACAGGAAAAACAATAACACTTGAAGTGGAACCATCTGAC 105394 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| ||| || ||||| || |||||||| || ||||| || |||||| Sbjct 105395 ACTATCGAAAACGTAAAAGCTAAAATTCAAGATAAAGAAGGTATTCCTCCAGATCAGCAA 105454 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGG 178078 || |||||||| || || ||||| | |||||||| Sbjct 105455 CGTCTTATCTTTGCTGGGAAACAATTAGAAGATGG 105489 >seq9175 Length=65522 Score = 150 bits (166), Expect = 4e-31 Identities = 157/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| |||||| | || || || || ||||| || || || ||| ||||| Sbjct 23333 CAAATCTTCGTCAAAACTTTGACTGGCAAGACCATCACTCTAGAAGTTGAACCATCAGAT 23274 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| |||||| || || ||||||||||| ||||| || || ||||| || Sbjct 23273 ACAATTGAGAATGTCAAAGCTAAAATCCAGGACAAAGAGGGAATTCCACCAGACCAACAG 23214 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || |||||||| || |||||||| || || || | || || ||| | Sbjct 23213 AGATTGATCTTTGCTGGAAAACAACTTGAAGATGGTAGAACACTATCTGACTACAACATT 23154 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || |||||||||||||| |||||||| Sbjct 23153 CAGAAAGAATCAACACTCCATCTTGT 23128 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| ||||| | || || || || ||||| || || || ||| ||||| Sbjct 23105 CAAATCTTCGTCAAAACATTGACTGGCAAGACCATCACGCTAGAAGTTGAACCATCAGAT 23046 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| |||||| || || ||||||||||| ||||| || || ||||| || Sbjct 23045 ACAATTGAGAATGTCAAAGCTAAAATCCAGGACAAAGAGGGAATTCCACCAGACCAACAG 22986 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| ||||||||||| || |||||||| || || || | || || || | Sbjct 22985 AGATTGATCTTTGCCGGAAAACAACTTGAAGATGGTAGAACACTATCTGACTACAATATT 22926 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || |||||||||||||| |||||||| Sbjct 22925 CAGAAAGAATCAACACTCCATCTTGT 22900 Score = 136 bits (150), Expect = 1e-26 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || |||||| | || || || || ||||| || || || ||| ||||| Sbjct 22877 CAAATCTTTGTCAAAACTTTGACTGGTAAGACCATCACTCTAGAAGTTGAACCATCAGAT 22818 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || |||||| || || ||||||||||| ||||| || || ||||| || Sbjct 22817 ACAATTGAAAATGTCAAAGCTAAAATCCAGGACAAAGAGGGAATTCCACCAGACCAACAG 22758 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || |||||||| || |||||||| || || || |||| || ||| | Sbjct 22757 AGATTGATCTTTGCTGGAAAACAACTTGAAGATGGTAGAACACTGTCCGACTACAACATT 22698 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 || |||||||| ||||| ||| | || ||| Sbjct 22697 CAGAAAGAATCCACACTCCATTTAGTATTG 22668 >seq39591 Length=213653 Score = 87.8 bits (96), Expect = 4e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 178022 AGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAG 178081 ||| || || || || |||||| || | ||||| || || |||||| | || |||||||| Sbjct 29079 AGGTATTCCCCCAGATCAGCAAAGATTGATCTTTGCTGGTAAACAGTTGGAGGATGGAAG 29138 Query 178082 GACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 ||| | ||||||||||| |||| |||||||| || || ||||| || | ||| | || Sbjct 29139 GACATTGTCCGATTATAACATCCAGAAAGAATCTACCCTTCATCTCGTCCTCAGATTGAG 29198 Query 178142 A 178142 | Sbjct 29199 A 29199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202581075088162