Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mytilus_20galloprovincialis_20[genbank_20GCA_5F001676915.1_202017- 03-16] 1,002,334 sequences; 1,500,149,602 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq380849 172 6e-38 seq83784 102 8e-17 seq705227 84.2 2e-11 >seq380849 Length=1041 Score = 172 bits (190), Expect = 6e-38 Identities = 567/860 (66%), Gaps = 26/860 (3%) Strand=Plus/Plus Query 15931 tttttCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCCATAAAATCAAAGGGATT 15990 |||||| || || || | | | || |||| ||| || |||||||| || ||||||||| Sbjct 92 TTTTTCAAAAAAATTTGATCTGCCGTCTAGAGAAATGTTTTCCATGAACGAAAAGGGATT 151 Query 15991 AGTAGC-TGAAAATAT-CTTAGAGTACCCCAGTTCCGTAACTAATCTATCTGCTACAAAT 16048 | || | |||||| ||| | | ||| | | | ||| | |||||| | || || Sbjct 152 TTTTGCATTAAAATAAGCTTCGTTT-CCCAATTGACACAAC-AGTCTATCACCAACGTAT 209 Query 16049 TCTATATA--TTGACACATTAAGTCGCAATTAATTCCTAT-AAGTCGTACCGGAAGAGCT 16105 |||||||| |||||| || | |||| || || || || ||| | | || ||| Sbjct 210 TCTATATACGTTGACATTTTTTTTG--AATTCATCCCAATCAAATCGCATGGCAA-AGCA 266 Query 16106 TTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGGTGGCTCGTGTT 16165 || ||||||| | | ||| || | | || || ||| ||||| | | || ||| Sbjct 267 TTAATTAAAAAGTCCTTTTCAATTGCTATGGCATCAAGAATAATATC--TCGAACG-GTT 323 Query 16166 TC---AGACGGTGTATGGTTTA---GGTGTTTAAACATTAGACACGCGAAGTCGCAATGT 16219 || ||| ||| | | ||| ||| ||||| | | || || ||||||||||| Sbjct 324 TCTTTAGAAGGTTTGTTAATTAAATGGTCGTTAAATAACAAGCATGCAAAGTCGCAATGC 383 Query 16220 AGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGT 16279 | ||||||||||| || || | ||||||| ||||||| |||| | | ||||| Sbjct 384 ATCCCTTCGTCTCTACTAATTAATTCGTTGCTGGCAGTTAACGCTGGTAATAATCCTCTA 443 Query 16280 TTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCA 16339 || || | ||| || || | ||||| || ||||| || ||||| ||||| | ||| Sbjct 444 TTTTTAATCCAAAAAATAGACGCAAAGCTACCAGAAAAAAAAATACCTTCAACCGCCGCA 503 Query 16340 AAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTAC-GAATCCATTTCTGTAC-CC 16397 ||||| | | ||||| | | | ||| | | || | |||||||| | ||| || Sbjct 504 AAAGCCACAAGACGTTCTCCAAAACTCGCAG-TCTCGGACTGTATCCATTTTT-TACTCC 561 Query 16398 ATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACAATTTCTCTTTTT 16457 |||| || |||| ||| || ||| |||||||| || ||||| || | ||||| Sbjct 562 ATTCCGCCTTTTTTTTAATTGTGGGCATAGTTTCTATTGCATTAAATAAAAATTTTTTTT 621 Query 16458 CCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCT 16517 || ||| | || |||| ||||| | ||| |||| || || |||||||| | Sbjct 622 GCTTTCGATCTTTAATGTACGACTCAATTAACTGACTATACAACTCCGAATGTATGTTTT 681 Query 16518 CTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAA 16577 | || | |||||||||||| || | |||||| ||| ||||| | ||| Sbjct 682 CCATCATCACCTGAAATCCATAAAAAACTTTTGCCTCCAAGTATTGGACTTCTTTGGAAA 741 Query 16578 ATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGT 16637 | ||||| | | || ||||| || || || ||||| || |||||||| ||||| | || Sbjct 742 ACCGTTCAACTATATTTTCATTAACTATGCCATCACTGGCTGCAAAAAAAGCCAAAACGT 801 Query 16638 GCTTAATGAAATATTTTTCGTCA-GATGTAA--GAATATGCCAATCTTTTAAATCTTTGG 16694 | || || | | ||| | | || ||| | | | ||||| | ||| | | Sbjct 802 GAGATATAAATTTTCGTTCTTTATCATTTAAATCATTTTTCCAATGCACGATGTCTGTAG 861 Query 16695 ATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAA 16754 | | ||||| ||||| ||||||||| ||||| ||| | |||||||||| ||||| | Sbjct 862 AAAAATCCAGCTCTTCAACCGTCCAAAAACTAGCTTCTGTCCTTTTATACATGTTCCATA 921 Query 16755 TATCATTGTATTGTATGGGA 16774 | |||| | |||||| ||| Sbjct 922 TGTCATGATGTTGTATAGGA 941 >seq83784 Length=3932 Score = 102 bits (112), Expect = 8e-17 Identities = 170/240 (71%), Gaps = 8/240 (3%) Strand=Plus/Minus Query 16587 CCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCA--ATATGTGCTTAAT 16644 ||| ||| ||||| || || || ||||| || ||||| || |||| | ||||| ||| Sbjct 3846 CCAAGTTTTCATTTACAATGCCATCACTAGCTGCAAAGAAAGCCAGGACATGTGA--AAT 3789 Query 16645 GAAATATTTTTCGTCAGATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCAC 16704 |||| ||| || ||| | | ||| | ||| | | | |||||| |||| ||| || Sbjct 3788 AAAATGTTTCTCCTCATCTTTCAGAGCGTCCCAGTGAATGAGATCTTTAGATAAATCAAC 3729 Query 16705 TTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAATATCATTGTA 16764 |||||| | ||||| ||| || |||| || || |||||||||||||| |||| || Sbjct 3728 TTCTTCAGCTGTCCAGAAGGAGGCTTCTGCTTTCTTGTACATTTTCCAAATGTCATGATA 3669 Query 16765 TTGTATGGGAAATACGACGTATCTATCTAAGGAT--TCCTTTAACACGGGTTCATCTTCC 16822 | ||||| || || || ||| ||| ||||| ||||| |||| || || |||||| Sbjct 3668 CTCAATGGGGAAGACAACAAATC-GTCT-AGGATTATCCTTCAACAATGGCTCTTCTTCC 3611 >seq705227 Length=470 Score = 84.2 bits (92), Expect = 2e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 || ||||||||||| ||||| ||| || || | || ||||| |||||| || || Sbjct 314 TCATCTCTGCTGATGAGTTCATTGCTGAATGTGAGACCAGGCATAATTCCTCTCTTTTTC 255 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCG 16345 ||||||||||| || ||||| || || || ||||| || ||||||| |||||| || Sbjct 254 AACCAGAATATTGCTGCAAAACTGCCAGAGAAAAATATCCCTTCAACAGCTGCAAAGGCA 195 Query 16346 ATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTT 16389 | | || ||| || || | |||| | | | | |||||||| Sbjct 194 ACAACTCTTTCTGCATATGATGCATTTGTTTCATTTATCCATTT 151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505006799484880