Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mytilus_20galloprovincialis_20[genbank_20GCA_5F001676915.1_202017- 03-16] 1,002,334 sequences; 1,500,149,602 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq380849 351 1e-91 seq83784 138 1e-27 seq705227 122 1e-22 seq31841 104 3e-17 seq707336 100 3e-16 seq218873 98.7 1e-15 seq39285 95.1 1e-14 seq660234 93.3 5e-14 seq123025 93.3 5e-14 seq170842 91.5 2e-13 seq162926 91.5 2e-13 seq154428 82.4 9e-11 >seq380849 Length=1041 Score = 351 bits (388), Expect = 1e-91 Identities = 606/874 (69%), Gaps = 21/874 (2%) Strand=Plus/Plus Query 23864 TTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTCCATGAAATCGGATGGATT 23923 |||||| |||||||| | | | || |||| || || ||||||||||| | ||||| Sbjct 92 TTTTTCAAAAAAATTTGATCTGCCGTCTAGAGAAATGTTTTCCATGAACGAAAAGGGATT 151 Query 23924 GGTAACATTATA----GATTCTTTTAAATCCCAATTCAGAAATCAATCTATCTGCGACAA 23979 | ||||| | | ||| ||| ||||||| | | | || |||||| | || Sbjct 152 TTTTGCATTAAAATAAGCTTCGTTT----CCCAATTGACACAACAGTCTATCACCAACGT 207 Query 23980 ACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCA 24039 | || ||||| ||| ||| ||| ||||||| || || | | ||| | ||| Sbjct 208 ATTCTATATACGTTGACATTTTTTTTGAATTCATCCCAATCAAATCGCATGGCAAAGCAT 267 Query 24040 CAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATCTTACTGTTTCTT 24099 | | | ||| || | |||||| | | || || |||||| || || ||||||| Sbjct 268 TAATTAAAAAGTCCTTTTCAATTGCTATGGCATCAAGAATAATATCTCGAACGGTTTCTT 327 Query 24100 CACTCGGTGGATACAATAAATGTT---TAAACATCAAACATGCGAAATCGCAGTGTAGAC 24156 | ||| | | |||||| | |||| | ||| ||||| || ||||| || | | Sbjct 328 TAGAAGGTTTGTTAATTAAATGGTCGTTAAATAACAAGCATGCAAAGTCGCAATGCATCC 387 Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 | |||||||||||||||||||||||| || | | || | || || | |||| Sbjct 388 CTTCGTCTCTACTAATTAATTCGTTGCTGGCAGTTAACGCTGGTAATAATCCTCTATTTT 447 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 ||| |||||| || |||||||| |||||||| ||||| ||||| || |||||||| | Sbjct 448 TAATCCAAAAAATAGACGCAAAGCTACCAGAAAAAAAAATACCTTCAACCGCCGCAAAAG 507 Query 24277 CAATAAGTCTTTCTCCATAACCGGCGCTGTCA---TGTATCCACTTTTGAGCCCAATCGG 24333 | | ||| | ||||||| ||| || | || |||||||| |||| | ||| || | Sbjct 508 CCACAAGACGTTCTCCAAAACTCGCAGTCTCGGACTGTATCCATTTTTTACTCCATTCCG 567 Query 24334 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTAC 24393 |||| ||||| | ||||| || ||||| |||||||| | | | ||||||| || | Sbjct 568 CCTTTTTTTTAATTGTGGGCATAGTTTCTATTGCATTAAATAAAAATTTTTTTTGCTTTC 627 Query 24394 TATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGG 24453 |||||||| || | ||||| || ||||||||| |||||||| |||||||| || Sbjct 628 GATCTTTAATGTACGACTCAATTAACTGACTATACAACTCCGAATGTATGTTTTCCATCA 687 Query 24454 CCATTTGAAATCCGTAGAAACATCTAGCCTCG--GTAATCTGTACTTCTATACAAAATCG 24511 || |||||||| || ||| | | ||||| ||| | | |||||| | |||| || Sbjct 688 TCACCTGAAATCCATAAAAAACTTTTGCCTCCAAGTATT--GGACTTCTTTGGAAAACCG 745 Query 24512 TTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTT 24571 ||| ||| ||||||||| ||||| || ||||||||||||||||| ||||| || || Sbjct 746 TTCAACTATATTTTCATTAACTATGCCATCACTGGCTGCAAAAAAAGCCAAAACGTGAGA 805 Query 24572 TATAAAATATTTTTC-GTCTGGTGTTAGT--TTATTCCAATCATTGATATCTTTAGATAT 24628 |||||| | | ||| | | | | | | || ||||||| ||| ||| |||| | Sbjct 806 TATAAATTTTCGTTCTTTATCATTTAAATCATTTTTCCAATGCACGATGTCTGTAGAAAA 865 Query 24629 ATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTC 24688 ||||| ||||| || |||||||| || |||| | |||||||||| ||||| ||||| Sbjct 866 ATCCAGCTCTTCAACCGTCCAAAAACTAGCTTCTGTCCTTTTATACATGTTCCATATGTC 925 Query 24689 ATGATATTGAATTGGAAAAATAACAAATCTATTT 24722 ||||| ||| || ||| || ||||| | ||| || Sbjct 926 ATGATGTTGTATAGGATAAGTAACATACCTACTT 959 >seq83784 Length=3932 Score = 138 bits (152), Expect = 1e-27 Identities = 150/199 (75%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 24519 AAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 24578 || |||||||| || || || ||||| |||||||| || |||| |||||| |||||| Sbjct 3844 AAGTTTTCATTTACAATGCCATCACTAGCTGCAAAGAAAGCCAGGACATGTGAAATAAAA 3785 Query 24579 TATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCT 24638 | ||| || || | | || | ||| | | ||| ||||||||||| ||| |||||| Sbjct 3784 TGTTTCTCCTCATCTTTCAGAGCGTCCCAGTGAATGAGATCTTTAGATAAATCAACTTCT 3725 Query 24639 TCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGA 24698 || ||||||| || || || ||||| || || ||||| ||||| ||||||||||| | | Sbjct 3724 TCAGCTGTCCAGAAGGAGGCTTCTGCTTTCTTGTACATTTTCCAAATGTCATGATACTCA 3665 Query 24699 ATTGGAAAAATAACAAATC 24717 || || || | |||||||| Sbjct 3664 ATGGGGAAGACAACAAATC 3646 >seq705227 Length=470 Score = 122 bits (134), Expect = 1e-22 Identities = 163/226 (72%), Gaps = 3/226 (1%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| ||||| || || | ||| ||| || ||||| || ||||| | || | ||||| Sbjct 316 CCTCATCTCTGCTGATGAGTTCATTGCTGAATGTGAGACCAGGCATAATTCCTCTCTTTT 257 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | | ||| ||||| | ||||| ||||| || || || ||||| || || ||||||| Sbjct 256 TCAACCAGAATATTGCTGCAAAACTGCCAGAGAAAAATATCCCTTCAACAGCTGCAAAGG 197 Query 24277 CAATAAGTCTTTCTCCATAACCGGCGCTG---TCATGTATCCACTTTTGAGCCCAATCGG 24333 ||| || ||||||| |||| || | |||| |||||| || ||||| || | Sbjct 196 CAACAACTCTTTCTGCATATGATGCATTTGTTTCATTTATCCATTTAATGGCCCAGTCTG 137 Query 24334 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATA 24379 |||||||||| ||||| || | ||||| |||||||| || ||||| Sbjct 136 CCTTCTTTTTCACACATGGTAAAGTCTCAATAGCATTGAATAGATA 91 >seq31841 Length=6731 Score = 104 bits (114), Expect = 3e-17 Identities = 191/271 (70%), Gaps = 12/271 (4%) Strand=Plus/Minus Query 148092 TGATGATAATACGTTAAGGGTTTTGCAAGACCAA-TTAACGATGGTTAAAATTAACAAGG 148150 |||||| || |||||| | |||||| | || || ||| | | ||||| | || | Sbjct 2958 TGATGACAAGACGTTAGACGAATTGCAAAAAGAACTTGACGTTA-TCAAAATCAGTAAAG 2900 Query 148151 ATCCCaaaaaaaTTCCAGAGTGGTTGGTAGTTAATAA-AATCTATATTCCCGATTTTGTA 148209 || | |||| | || | |||||| || || || ||| || ||||| || ||||| Sbjct 2899 ATGCTTTAAAAGTCCCCAACTGGTTGAATGTGAACAAGAATTTA-ATTCCTGACTTTGTG 2841 Query 148210 GTAGAGGATCCGAAACAATCTCAAATATGGGAAATTTCAGGAGCAGAGTTTA---CATCT 148266 || | || |||||| | || | ||| ||||||||| ||||||||||||| |||| Sbjct 2840 GTCAAAGACCCGAAAAAGTCACCAATCTGGGAAATTATGGGAGCAGAGTTTAGTCAATCT 2781 Query 148267 TCCAAGTCACATACAGCGAATGGAATATCGATTAGATTTCCTAGATTTACTAGGATTAGA 148326 || | |||||||| |||||||||| || ||||||| ||| || ||| | ||| Sbjct 2780 TC---TGCCCATACAGCTGATGGAATATCAATACGATTTCCAAGAATTGCTAAAGTCAGA 2724 Query 148327 GAAGATAAAACGTGGAAAGAAT-CTACTCAT 148356 || |||||||| ||| ||||| ||||| || Sbjct 2723 GACGATAAAACTTGG-GAGAATGCTACTGAT 2694 >seq707336 Length=468 Score = 100 bits (110), Expect = 3e-16 Identities = 154/214 (72%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 148135 GTTAAAATTAACAAGGATCCCaaaaaaaTTCCAGAGTGGTTGGTAGTTAATAAAATCTAT 148194 || || || ||||| || || ||| | ||| | ||||| |||||||| || | Sbjct 466 GTGAAGATCAACAAAGACGTCACCAAAGTACCAAACTGGTTACATGTTAATAAG-TCCCT 408 Query 148195 ATTCCC-GATTTTGTAGTAGAGGATCCGAAACAATCTCAAATATGGGAAATTTCAGGAGC 148253 |||| |||||||| || |||| || | | |||| | ||| ||||||||| ||| || Sbjct 407 GGTCCCTGATTTTGTTGTCAAGGACCCAAGAGAATCGCCAATTTGGGAAATTATAGGGGC 348 Query 148254 AGAGTTTAC---ATCTTCCAAGTCACATACAGCGAATGGAATATCGATTAGATTTCCTAG 148310 |||||||| |||| | || | |||||||| |||| ||||||||||||||||| || Sbjct 347 AGAGTTTAGTAAATCTCC--AGCC-CATACAGCTGATGGGATATCGATTAGATTTCCCAG 291 Query 148311 ATTTACTAGGATTAGAGAAGATAAAACGTGGAAA 148344 || || ||||||| |||||||| ||| || Sbjct 290 GATTGCTGAAGTTAGAGATGATAAAACATGGGAA 257 >seq218873 Length=1880 Score = 98.7 bits (108), Expect = 1e-15 Identities = 351/543 (65%), Gaps = 17/543 (3%) Strand=Plus/Plus Query 53753 TGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTC 53812 ||||| || || | || ||||| || | ||| || || ||||||| || || || Sbjct 469 TGTATGATTTCTGCACACAGATTGCTGCTCTTTATAGTCCCTAAATGTTTATGGTTGGAT 528 Query 53813 TTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCT 53872 |||| |||||| |||| || || ||| | || || || |||||||| || | Sbjct 529 TTTTCGTTACATTCATCTTTGAGTAGCATGTAAGGGGTTCCGGTTTCAATTTGTGCCATA 588 Query 53873 ATAATCGCTTTCCAGACGACACGAGCCTTTATTA-TAGATTTGTATCTCTTT------TC 53925 ||||| || ||| | | || ||||||| | | |||| |||| |||| || Sbjct 589 ATAATACTTTGCCATATATCTCGGGCCTTTACAACTTGATT-GTATTTCTTACTGGGATC 647 Query 53926 TCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGG 53985 | ||||| || || || ||||||||| | || | || | || || Sbjct 648 ATTCTCGTAAGACGTGTATAACTTTTCAAACTCAGCACCGTAGCAATCGGATAAACCTTC 707 Query 53986 ACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAG 54045 |||||| |||||||| || | ||| ||| | || | |||| || | ||| || Sbjct 708 ACATTCGCTAGGACACATTAAAGTCCAGTCTGCACCAGCTCGAACTCTTTCAAAAAACAG 767 Query 54046 ATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATT 54105 || |||| ||| | ||| | || | ||||||||| || | ||| || || ||||| Sbjct 768 ATTCGGAAGCCATAACGCTGTGAACAAATCTCTGGTCCTTTCTTCATCTACCCCCGTATT 827 Query 54106 CTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCAT 54165 ||||||||||| | |||||| || || || | |||||| |||||| || | | | Sbjct 828 TTTTTTAAGATCTAAGAACGCAATTATGTCGGCATGCCATGGTTCC-AGAAAA-----AA 881 Query 54166 AACTCCAGG-CCGTTTGTTT--CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 54222 ||| ||| || ||| ||| ||||||||| | | ||| | ||| |||| |||| Sbjct 882 AACCAAAGGTCCCTTTCTTTTATCTCCCTGATTGACGAGTCTTGTCGTGGAATTAAAAAC 941 Query 54223 TCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACT 54282 ||| ||| ||| | |||||| ||| ||| | || |||| | |||| ||| | Sbjct 942 TCTTAACCGTGGCACTATACCACGAGATATACCGTCTGTATCGGAAACGAAGCTACCATT 1001 Query 54283 GGC 54285 ||| Sbjct 1002 GGC 1004 >seq39285 Length=6060 Score = 95.1 bits (104), Expect = 1e-14 Identities = 189/271 (70%), Gaps = 12/271 (4%) Strand=Plus/Minus Query 148092 TGATGATAATACGTTAAGGGTTTTGCAAGACCAA-TTAACGATGGTTAAAATTAACAAGG 148150 |||||| || |||||| | |||||| | || || ||| || | ||||| | ||| | Sbjct 5173 TGATGACAAGACGTTAGACGAATTGCAAAAAGAACTTGACGTTG-TCAAAATCAGCAAAG 5115 Query 148151 ATCCCaaaaaaaTTCCAGAGTGGTTGGTAGTTAATAA-AATCTATATTCCCGATTTTGTA 148209 || | |||| |||| | ||||| || || || ||| || ||||| || ||||| Sbjct 5114 ATGCTTTAAAAGTTCCCAACTGGTTAAATGTGAACAAGAATTTA-ATTCCTGACTTTGTG 5056 Query 148210 GTAGAGGATCCGAAACAATCTCAAATATGGGAAATTTCAGGAGCAGAGTT---TACATCT 148266 || | ||||||||| | || | ||| |||||||| ||||||||||| | |||| Sbjct 5055 GTCAAAGATCCGAAAAAGTCACCAATCTGGGAAATCATGGGAGCAGAGTTCAGTCAATCT 4996 Query 148267 TCCAAGTCACATACAGCGAATGGAATATCGATTAGATTTCCTAGATTTACTAGGATTAGA 148326 || | |||||||| |||| ||||| || ||||||| ||| | | | | ||| Sbjct 4995 TC---TGCCCATACAGCTGATGGTATATCAATACGATTTCCAAGAATCGCCAAAGTCAGA 4939 Query 148327 GAAGATAAAACGTGGAAAGAAT-CTACTCAT 148356 || |||||||| ||| ||||| ||||| || Sbjct 4938 GATGATAAAACTTGG-GAGAATGCTACTGAT 4909 >seq660234 Length=515 Score = 93.3 bits (102), Expect = 5e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 24395 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 24454 ||| |||| ||||||||||| || | || |||||||| ||||||||||| || || || Sbjct 265 ATCCTTAATGTATGTATCAATTAACAAGCTGTACATTTCAGAATGAATGTTCTCCATTGC 206 Query 24455 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTC 24514 || || ||||| |||||||| || ||||| ||| || ||||| ||| |||| ||| Sbjct 205 TATCTGGAATCCATAGAAACACCTTGCCTCTGTAGCTTGAACTTCCTTACTGAATCTTTC 146 Query 24515 T 24515 | Sbjct 145 T 145 >seq123025 Length=3020 Score = 93.3 bits (102), Expect = 5e-14 Identities = 195/282 (69%), Gaps = 9/282 (3%) Strand=Plus/Plus Query 148069 ACGGTAACTAAATGT---TCAGGACATGATGATAATACGTTAAGGGTTTTGCAAGACCAA 148125 ||||| || |||||| ||||| | ||||||||| || ||| | | || ||| Sbjct 2247 ACGGTTACAAAATGTAGTTCAGGTCTTGATGATAAGACTTTAGAAGAACTACAGTTCCAG 2306 Query 148126 -TTAACGATGGTTAAAATTAACAAGGATCCCaaaaaaaTTCCAGAGTGGTTGGTAGTTAA 148184 || | | || | || || ||||| || || ||| | ||| | ||||| ||||| Sbjct 2307 CTTGAAGTTG-TGAAGATCAACAAAGACGTCACCAAAGTACCAAACTGGTTACATGTTAA 2365 Query 148185 TAAAATCTATATTCCC-GATTTTGTAGTAGAGGATCCGAAACAATCTCAAATATGGGAAA 148243 ||| || | |||| |||||||| || |||| || ||| |||| | ||| ||||||| Sbjct 2366 TAAG-TCCCTGGTCCCTGATTTTGTTGTCAAGGACCCAAAAGAATCGCCAATTTGGGAAA 2424 Query 148244 TTTCAGGAGCAGAGTTTA-CATCTTCCAAGTCACATACAGCGAATGGAATATCGATTAGA 148302 || ||||||||||||| | | | || | |||||||| |||| ||||| || ||| Sbjct 2425 TTATTGGAGCAGAGTTTAGTAAATCACCAG-CCCATACAGCTGATGGGATATCAATCAGA 2483 Query 148303 TTTCCTAGATTTACTAGGATTAGAGAAGATAAAACGTGGAAA 148344 || || || || || ||||||| |||||||| ||| || Sbjct 2484 TTCCCCAGGATTGCTGATGTTAGAGATGATAAAACATGGGAA 2525 >seq170842 Length=2335 Score = 91.5 bits (100), Expect = 2e-13 Identities = 109/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934 |||| | ||||| ||||| || || | ||| || | || || || ||||| || | Sbjct 413 TCCAAGCATAAAAGTGCATGCTGGTCAATTTTCCGTAGTTTGGTTCAGCAATATGAATGT 354 Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994 | | |||||| || || || || || || || ||||| |||| |||||| |||||||||| Sbjct 353 TGAGAGATTGGCTCTGGTCAATAAAAGCACCTCTGTCGGCAGACATTTTGATGATCGTCT 294 Query 52995 TTTGTGGAATTTCCCAAATAGTTTTATA 53022 | |||| |||||||| | ||| ||||| Sbjct 293 TCTGTGATATTTCCCATACAGTCTTATA 266 >seq162926 Length=2426 Score = 91.5 bits (100), Expect = 2e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 53774 TTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTA 53833 |||||||| || |||||||||| |||||||||||| ||| ||||||| |||||| Sbjct 128 TTACTACATTTAATGGTTCCTAGATTTTGTTGATTTGACTTCCTGTTACAGTGATCCTTG 187 Query 53834 TAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCA 53886 || | ||| |||| ||||||||||| | || |||||||| || || | ||| Sbjct 188 TATAACATGTATGGTGTACCAGTTTCTGTTTGAGATTCTATGATGGCATACCA 240 >seq154428 Length=2533 Score = 82.4 bits (90), Expect = 9e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 53774 TTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTA 53833 |||||||| || |||||||||| |||||| ||||| ||| ||||||| |||||| Sbjct 1264 TTACTACATTTAATGGTTCCTAGATTTTGCTGATTTGACTTCCTGTTACAGTGATCCTTG 1205 Query 53834 TAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCA 53886 || | ||| | || ||||||||||| | || |||||||| || || | ||| Sbjct 1204 TATAACATGTAAGGGGTACCAGTTTCTGTTTGAGATTCTATGATGGCATACCA 1152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 586282758172320