Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mytilus_20galloprovincialis_20[genbank_20GCA_5F001676915.1_202017- 03-16] 1,002,334 sequences; 1,500,149,602 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq227251 131 3e-25 seq40568 125 1e-23 seq148027 116 6e-21 seq106915 100 4e-16 seq92178 91.5 2e-13 >seq227251 Length=1814 Score = 131 bits (144), Expect = 3e-25 Identities = 161/220 (73%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 124567 GCAAAACTATAACTATAGAGATTGAAGCAAATGATACAATTTCTAATTTAAAACAGAAAA 124626 ||||||| || ||| ||||| ||||| || ||||| ||| ||| | ||| || | Sbjct 1 GCAAAACAATCACTCTAGAGGTTGAACCATCGGATACCATTGAGAATGTTAAAGCTAAGA 60 Query 124627 TTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAAT 124686 | ||||| || |||||||| ||||| |||||||| || | || || |||||||||||| Sbjct 61 TCCAAGACAAGGAAGGTATTCCACCAGATCAACAGAGATTAATCTTCGCAGGAAAACAAC 120 Query 124687 TAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGG 124746 | || ||| | | || | |||||| || |||||||| ||||| || | ||| ||| Sbjct 121 TTGAAGATGGCAGGACTCTTTCAGATTACAACATTCAAAAGGAATCCACACTCCATCTGG 180 Query 124747 TTTTACGTTTACGAGGTGGTATTAAAAATTCATAAAAATT 124786 |||| ||| |||| ||||| ||| ||| | | ||| ||| Sbjct 181 TTTTGCGTCTACGTGGTGGAATTTAAACTGAACAAACATT 220 >seq40568 Length=5963 Score = 125 bits (138), Expect = 1e-23 Identities = 107/132 (81%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 202738 ATATTTTTTAATAAATAAATCAACATCAAATTTACGTCTACATCCTTCATAACTCATATA 202797 ||||||| ||| ||| | ||||||||||||| | | |||| || |||||| |||| || Sbjct 4108 ATATTTTCTAACAAAAGCAGCAACATCAAATTTTCTTTTACAACCATCATAATTCATGTA 4049 Query 202798 TCTAATTTTACCAAATATTGGTCTTTCTTTCCATGCTCTATCATGAATACCACAAATTGA 202857 | |||||| ||||| ||| |||||| |||||| || |||||| |||||||||||||| Sbjct 4048 GCGAATTTTTCCAAAAATTTCTCTTTCCTTCCATCCTTGATCATGGATACCACAAATTGA 3989 Query 202858 CCACATACATCC 202869 ||||||||| || Sbjct 3988 CCACATACAGCC 3977 >seq148027 Length=2619 Score = 116 bits (128), Expect = 6e-21 Identities = 105/132 (80%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 202738 ATATTTTTTAATAAATAAATCAACATCAAATTTACGTCTACATCCTTCATAACTCATATA 202797 ||||||| ||| || | ||||||||||||| | | |||| || |||||| |||| || Sbjct 226 ATATTTTCTAACGAAAGCAGCAACATCAAATTTTCTTTTACAACCATCATAATTCATGTA 285 Query 202798 TCTAATTTTACCAAATATTGGTCTTTCTTTCCATGCTCTATCATGAATACCACAAATTGA 202857 | |||||| ||||| ||| |||||| |||||| || |||||| |||||||||||||| Sbjct 286 GCGAATTTTTCCAAAAATTTCTCTTTCCTTCCATCCTTGATCATGGATACCACAAATTGA 345 Query 202858 CCACATACATCC 202869 |||||| || || Sbjct 346 CCACATGCAGCC 357 >seq106915 Length=3340 Score = 100 bits (110), Expect = 4e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 205651 TCAGGtttattttttattttatttatAATATGTGTTAATTGATCAAATCCTTGATTTGTA 205710 ||||| || |||| ||||| || || | | || |||||| |||| ||||| ||| Sbjct 1758 TCAGGATTTGTTTTGATTTTGTTGATGACGTCTGCTAATTGGTCAACACCTTGTCCAGTA 1817 Query 205711 TAATTTGTATCCATATCAATATATTTAGCACCAAAATGACGCCATTGAAAACCATAAACT 205770 || | || || |||||| | || | |||||||||||| | ||| ||||| ||||||||| Sbjct 1818 TAGTCTGCATGCATATCTTTGTACTCAGCACCAAAATGTCTCCACTGAAATCCATAAACT 1877 Query 205771 GGACCTAAATCACCT 205785 ||||| ||||||||| Sbjct 1878 GGACCCAAATCACCT 1892 >seq92178 Length=3697 Score = 91.5 bits (100), Expect = 2e-13 Identities = 105/139 (76%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATT-TTTGCAGGAAA 124681 ||||| | || |||||||| || || ||||||||| | ||||| ||||| ||||| Sbjct 841 AAAATACGTGACAAAGAAGGCATTCCGGAAGATCAACAACGT-TTATTCTTTGCTGGAAA 783 Query 124682 ACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCA 124741 ||| | ||||| | |||| || |||||||||||| | |||||| ||||||| || Sbjct 782 GCAACTGGAGGACGGAAGAACCTTGTCTGATTATAATATTTATAAAGAAGCAACTTTACA 723 Query 124742 TTTGGTTTTACGTTTACGA 124760 |||||||||| | || ||| Sbjct 722 TTTGGTTTTAAGATTTCGA 704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 745990759571200