Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mytilus_20galloprovincialis_20[genbank_20GCA_5F001676915.1_202017- 03-16] 1,002,334 sequences; 1,500,149,602 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq203241 102 1e-16 seq152430 96.9 6e-15 seq40568 89.7 9e-13 seq148027 86.0 1e-11 >seq203241 Length=2009 Score = 102 bits (112), Expect = 1e-16 Identities = 125/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 51885 GATAGCCAGAGCATTATGGTTGTACTATATATCCAAAGGGATAGAATACTTGGATACGGT 51944 |||||||| |||||||||| || ||| | || || | ||||| || ||||| | Sbjct 1099 GATAGCCAAGGCATTATGGTGGTTTTATTTCTCAAAGTGTTTAGAAATGTTAGATACAAT 1158 Query 51945 ATTTTTCATACTTAGGAAAAAATTTAATCAGGTTAGTTTTCTACACGTATATCATCATTT 52004 |||||| || | | || ||| ||| || |||||||| |||| |||||||||||| Sbjct 1159 ATTTTTTGTATTGCGTAAGAAAAATAACCAAGTTAGTTTCTTACATGTATATCATCATGC 1218 Query 52005 TACTATGTTTACTCTAGGATGGATAGGTATTAAATGGTTTGCTGGAGGTCA 52055 | |||||||| | ||| | ||||| || |||||||| | ||||| || || Sbjct 1219 TTCTATGTTTCCCCTATGGTGGATTGGAGTTAAATGGGTAGCTGGTGGACA 1269 >seq152430 Length=2559 Score = 96.9 bits (106), Expect = 6e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 51885 GATAGCCAGAGCATTATGGTTGTACTATATATCCAAAGGGATAGAATACTTGGATACGGT 51944 |||||||| |||||||||| || ||| | || || | ||||| || ||||| | Sbjct 2419 GATAGCCAAGGCATTATGGTGGTTTTATTTCTCAAAGTGTTTAGAAATGTTAGATACAAT 2360 Query 51945 ATTTTTCATACTTAGGAAAAAATTTAATCAGGTTAGTTTTCTACACGTATATCATCATTT 52004 |||||| || | | || ||| ||| || ||||| || |||| |||||||||||| Sbjct 2359 ATTTTTTGTATTGCGTAAGAAAAATAACCAAGTTAGCTTCTTACATGTATATCATCATGC 2300 Query 52005 TACTATGTTTACTCTAGGATGGATAGGTATTAAATGGTTTGCTGGAGGTCA 52055 | |||||||| | ||| | ||||| || |||||||| | ||||| || || Sbjct 2299 TTCTATGTTTCCCCTATGGTGGATCGGAGTTAAATGGGTAGCTGGTGGACA 2249 >seq40568 Length=5963 Score = 89.7 bits (98), Expect = 9e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 189624 TAGGTTGTATGTGGTCTATTTGCGGATTACACGATAGAGCGTGGAAAGAAAGACCGATAT 189683 |||| ||||||||||| ||||| || | || ||| || ||||| |||||| || | Sbjct 3975 TAGGCTGTATGTGGTCAATTTGTGGTATCCATGATCAAGGATGGAAGGAAAGAGAAATTT 4034 Query 189684 TTGGAAAGATAAGATATATGAATTATGAGAGTTCTAAGAAGAAATTTGATGTTGCTG 189740 ||||||| || | || ||||||||||| ||| ||| | |||||||||||||||| Sbjct 4035 TTGGAAAAATTCGCTACATGAATTATGATGGTTGTAAAAGAAAATTTGATGTTGCTG 4091 >seq148027 Length=2619 Score = 86.0 bits (94), Expect = 1e-11 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 189624 TAGGTTGTATGTGGTCTATTTGCGGATTACACGATAGAGCGTGGAAAGAAAGACCGATAT 189683 |||| || |||||||| ||||| || | || ||| || ||||| |||||| || | Sbjct 359 TAGGCTGCATGTGGTCAATTTGTGGTATCCATGATCAAGGATGGAAGGAAAGAGAAATTT 300 Query 189684 TTGGAAAGATAAGATATATGAATTATGAGAGTTCTAAGAAGAAATTTGATGTTGCTG 189740 ||||||| || | || ||||||||||| ||| ||| | |||||||||||||||| Sbjct 299 TTGGAAAAATTCGCTACATGAATTATGATGGTTGTAAAAGAAAATTTGATGTTGCTG 243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 911629905733360