Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mytilus_20galloprovincialis_20[genbank_20GCA_5F001676915.1_202017- 03-16] 1,002,334 sequences; 1,500,149,602 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq380849 280 1e-70 seq83784 104 2e-17 seq120769 96.9 3e-15 >seq380849 Length=1041 Score = 280 bits (310), Expect = 1e-70 Identities = 571/842 (68%), Gaps = 12/842 (1%) Strand=Plus/Plus Query 15959 ACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCATAAAATCAAAA 16018 ||||| |||||||| ||||||| | | || |||| ||||| |||||||| || ||| Sbjct 87 ACTCTTTTTTCAAAAAAATTTGATCTGCCGTCTAGAGAAATGTTTTCCATGAACGAAAAG 146 Query 16019 GGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAACAATAATCTATCCGCCACA 16078 |||||||||| | | | || ||| |||||||| |||| | |||||| | || Sbjct 147 GGATTTTTTGCATTAAAATAAGCTTCGTTTCCCAATTGACACAACAGTCTATCACCAACG 206 Query 16079 AATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTAACAGGGATTGCT 16138 ||||||||||| | |||| | | ||||| || || || | || | || Sbjct 207 TATTCTATATACGTTGACATTTTTTTTGAATTCATCCCAATCAAATCGCATGGCAAAGCA 266 Query 16139 TCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATATCTCTTACTACACTA 16198 | ||||||| | ||||| || | || |||| || ||||||| || | Sbjct 267 TTAATTAAAAAGTCCTTTTCAATTGCTATGGCATCAAGAATAATATCTCGAACGGTT-TC 325 Query 16199 TTTA-ACGGAGGGTTTAATAAGTGTT---TAAACATTATACAAGCAAAATCACAATGCAA 16254 |||| | || ||| | ||| || | |||| | | || ||||| || ||||||| Sbjct 326 TTTAGAAGGTTTGTTAATTAAATGGTCGTTAAATAACAAGCATGCAAAGTCGCAATGCAT 385 Query 16255 TCCTTCGTCCCTACTTATTAACTCGTT--TGAAAATGTAAGACCTGGCATTAGTCCTCGT 16312 |||||||| ||||| ||||| ||||| || | | | | |||| | || ||||| Sbjct 386 CCCTTCGTCTCTACTAATTAATTCGTTGCTGGCAGTTAACG--CTGGTAATAATCCTCTA 443 Query 16313 TTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCA 16372 |||||||||||||| |||| ||||| ||||||||| || ||||||||||| || ||| Sbjct 444 TTTTTAATCCAAAAAATAGACGCAAAGCTACCAGAAAAAAAAATACCTTCAACCGCCGCA 503 Query 16373 AATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctatccattttttagcccaa 16432 || || || | || || || | | | | | | ||||||||||||| ||| Sbjct 504 AAAGCCACAAGACGTTCTCCAAAACTCGCAGTCTCGGACTGTATCCATTTTTTACTCCAT 563 Query 16433 tttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATAAATAAtttttttCT 16492 | || |||| ||||| | ||| | |||||||||||||||||| | ||||||| Sbjct 564 TCCGCCTTTTTTTTAATTGTGGGCATAGTTTCTATTGCATTAAATAAAAATTTTTTTTGC 623 Query 16493 TTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCC 16552 || | |||| ||| || | || |||| |||||||| || ||||| || || ||| Sbjct 624 TTTCGATCTTTAATGTACGACTCAATTAACTGACTATACAACTCCGAATGTATGTTTTCC 683 Query 16553 ATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCAGAGTAAAAC 16612 || | |||||| |||||||| | | || || | ||| ||||| | ||||| Sbjct 684 ATCATCACCTGAAATCCATAAAAAACTTTTGCCTCCAAGTATTGGACTTCTTTGGAAAAC 743 Query 16613 CTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGT 16672 | ||| ||| ||||| |||||||| ||||| || ||||||||||| || | | ||| Sbjct 744 CGTTCAACTATATTTTCATTAACTATGCCATCACTGGCTGCAAAAAAAGCCAAAACGTGA 803 Query 16673 TTAATAAAAtttttttCGTTATC---TGAAAGTTTTAACCAGTCAGAAAAATCTTTTGAT 16729 ||||| ||| ||| ||||| | || ||| ||| | | ||| | || Sbjct 804 GATATAAATTTTCGTTCTTTATCATTTAAATCATTTTTCCAATGCACGATGTCTGTAGAA 863 Query 16730 AAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATACATTTTCCATATG 16789 ||||| | |||||| || ||||||||| ||| | | | |||||||||| ||||||||| Sbjct 864 AAATCCAGCTCTTCAACCGTCCAAAAACTAGCTTCTGTCCTTTTATACATGTTCCATATG 923 Query 16790 TC 16791 || Sbjct 924 TC 925 >seq83784 Length=3932 Score = 104 bits (114), Expect = 2e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 16622 AAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAA 16681 |||||||| || || || ||||| ||||||||||| || || || | ||| ||||||| Sbjct 3844 AAGTTTTCATTTACAATGCCATCACTAGCTGCAAAGAAAGCCAGGACATGTGAAATAAAA 3785 Query 16682 tttttttCGTTATCTGAAAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCT 16741 | ||| || | |||| || ||||| | | |||||| |||||||| || ||| Sbjct 3784 TGTTTCTCCTCATCTTTCAGAGCGTCCCAGTGAATGAGATCTTTAGATAAATCAACTTCT 3725 Query 16742 TCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATACATTTTCCATATGTCTTCGTAAACA 16801 || | ||||| || || || | || || || ||||||||||| ||||| | || || Sbjct 3724 TCAGCTGTCCAGAAGGAGGCTTCTGCTTTCTTGTACATTTTCCAAATGTCATGATACTCA 3665 Query 16802 ATAGGAAACACAACA 16816 || || || |||||| Sbjct 3664 ATGGGGAAGACAACA 3650 >seq120769 Length=3061 Score = 96.9 bits (106), Expect = 3e-15 Identities = 80/98 (82%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 15928 TGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCC 15987 |||||| || ||| ||||||||||| | ||||| || ||||| || ||||||||||| Sbjct 1683 TGACATGACACCCATCTTTTGATATTCTCCTACTCTTTTCTCAAAAAAGTTTGTTTTTCC 1624 Query 15988 TTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTT 16025 ||||| ||| || | ||||||||| ||||| ||||||| Sbjct 1623 TTCTAGTGAGATCTGTTCCATAAAGTCAAATGGATTTT 1586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 456717106212400