Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mytilus_20galloprovincialis_20[genbank_20GCA_5F001676915.1_202017- 03-16] 1,002,334 sequences; 1,500,149,602 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq380849 248 8e-61 seq705227 104 2e-17 seq120769 102 8e-17 seq660234 93.3 4e-14 >seq380849 Length=1041 Score = 248 bits (274), Expect = 8e-61 Identities = 587/871 (67%), Gaps = 32/871 (4%) Strand=Plus/Plus Query 13928 ACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCAAAT 13987 |||||||||||||| || || | | | || || || || || |||||||| || ||| Sbjct 87 ACTCTTTTTTCAAAAAAATTTGATCTGCCGTCTAGAGAAATGTTTTCCATGAACGAAAAG 146 Query 13988 GGATTTGTTGACATAAACA----CTT--TATCACAACCTAGTTCTAATAGTAATCTATCC 14041 |||||| ||| ||| || | ||| | || ||| || | | | |||||| Sbjct 147 GGATTTTTTG-CATTAAAATAAGCTTCGTTTCCCAA-----TTGACACAACAGTCTATCA 200 Query 14042 GCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGA 14101 ||| | | || ||||| |||||| | ||||||| || || | | || Sbjct 201 CCAACGTATTCTATATACGTTGACATTTTTTTTGAATTCATCCCAATCAAATCGCATGGC 260 Query 14102 ATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAA-TCGTAAT 14160 | ||| ||||||| || ||||| || | | || || |||||| ||| || Sbjct 261 AAAGCATTAATTAAAAAGTCCTTTTCAATTGCTATGGCATCAAGAATAATATCTCG-AAC 319 Query 14161 AATTTCATTAGAAGGAGGATATTTTAGATGTT---TAAAAATTAAACACGCAAAATCACA 14217 |||| |||||||| | ||| ||| | |||| | || || ||||| || || Sbjct 320 GGTTTCTTTAGAAGGTTTGTTAATTAAATGGTCGTTAAATAACAAGCATGCAAAGTCGCA 379 Query 14218 ATGAAGGCCCTCATCTCTACTAATAAGTTCGTT--TGAAAATGTTAATCCTGGCATCAAT 14275 ||| | || || ||||||||||| | |||||| || | ||||| |||| | ||| Sbjct 380 ATGCATCCCTTCGTCTCTACTAATTAATTCGTTGCTGGCA--GTTAACGCTGGTAATAAT 437 Query 14276 CCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACT 14335 |||| ||||| | |||||| || | || || || ||||| || || || ||||| Sbjct 438 CCTCTATTTTTAATCCAAAAAATAGACGCAAAGCTACCAGAAAAAAAAATACCTTCAACC 497 Query 14336 GCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTA 14395 || ||||| || | | ||||||||||| || | | | | |||||||||| || Sbjct 498 GCCGCAAAAGCCACAAGACGTTCTCCAAAACTCGCAGTCTCGGACTGTATCCATTTTTTA 557 Query 14396 GCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATGTTCC 14455 |||||| | ||||||||||| ||| ||||| || |||||||||||| || Sbjct 558 CTCCATTCCGCCTTTTTTTTAATTGTGGGCATAGTTTCTATTGCATTAAATAAAAATTTT 617 Query 14456 TTCT-CTTTAGTACTTGAAATGTATGTATCAAT-AAGTAAGCTATACATTTCAGAGTGTA 14513 || | |||| | ||| || |||| | ||||| || | | ||||||| || || |||| Sbjct 618 TTTTGCTTTCGATCTTTAA-TGTACGACTCAATTAACTGA-CTATACAACTCCGAATGTA 675 Query 14514 TGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCTG 14573 |||||||||| | |||||| ||||||||| | | || || | |||| || ||| Sbjct 676 TGTTTTCCATCATCACCTGAAATCCATAAAAAACTTTTGCCTCCAAGTATTGGACTTCTT 735 Query 14574 AGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCA 14633 | |||| | ||| | | ||||||||||||||| |||||||| ||||||||||| |||| Sbjct 736 TGGAAAACCGTTCAACTATATTTTCATTAACTATGCCATCACTGGCTGCAAAAAAAGCCA 795 Query 14634 ATATGTTTTTAATAAAGTATTGCTCT---TCATTGCTGAGT--TTTTTCCAATCGGCTAA 14688 | | || ||||| | | | ||| ||||| | | | |||||||||| | | Sbjct 796 AAACGTGAGATATAAATTTTCGTTCTTTATCATT--TAAATCATTTTTCCAATGCACGAT 853 Query 14689 ATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTTTATACAT 14748 || |||||| ||| | || ||||| |||||||||||||| | | |||||||||| Sbjct 854 GTCTGTAGAAAAATCCAGCTCTTCAACCGTCCAAAAACTAGCTTCTGTCCTTTTATACAT 913 Query 14749 TACCCATATTTCTTTATATAATATAGGAAAA 14779 |||||| || | || | ||||||| || Sbjct 914 GTTCCATATGTCATGATGTTGTATAGGATAA 944 >seq705227 Length=470 Score = 104 bits (114), Expect = 2e-17 Identities = 158/225 (70%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 |||||||||| || || ||||| || ||||| | || ||||| | ||||| |||| Sbjct 316 CCTCATCTCTGCTGATGAGTTCATTGCTGAATGTGAGACCAGGCATAATTCCTCTCTTTT 257 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 | ||||| |||||||| || || || || || ||||| || ||||| || ||||| | Sbjct 256 TCAACCAGAATATTGCTGCAAAACTGCCAGAGAAAAATATCCCTTCAACAGCTGCAAAGG 197 Query 14346 CTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAG 14405 | | | || |||| || | ||||| ||| | | ||||||||| | ||||| || | Sbjct 196 CAACAACTCTTTCTGCATATGATGCATTTGTTTCATTTATCCATTTAATGGCCCAGTCTG 137 Query 14406 AtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAAT 14450 || ||||| | | | | || ||||||||||| |||| || Sbjct 136 CCTTCTTTTTCACACATGGTAAAGTCTCAATAGCATTGAATAGAT 92 >seq120769 Length=3061 Score = 102 bits (112), Expect = 8e-17 Identities = 80/96 (83%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 13898 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13957 || || || ||||| ||||||||||| | |||||||| ||||| ||||| ||||| ||| Sbjct 1682 GACATGACACCCATCTTTTGATATTCTCCTACTCTTTTCTCAAAAAAGTTTGTTTTTCCT 1623 Query 13958 TCCAGTGATATATTTTCCATAAAATCAAATGGATTT 13993 || ||||| || | ||||||||| |||||||||||| Sbjct 1622 TCTAGTGAGATCTGTTCCATAAAGTCAAATGGATTT 1587 >seq660234 Length=515 Score = 93.3 bits (102), Expect = 4e-14 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 14473 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTG 14532 ||||||||||||||| | ||||| ||||||||||| || ||||| ||||| |||||||| Sbjct 259 AATGTATGTATCAATTAACAAGCTGTACATTTCAGAATGAATGTTCTCCATTGCTATCTG 200 Query 14533 AAAACCATAAAAACATCTAGCTTCTG 14558 || ||||| ||||| || || |||| Sbjct 199 GAATCCATAGAAACACCTTGCCTCTG 174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476302207567120