Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mytilus_20galloprovincialis_20[genbank_20GCA_5F001676915.1_202017- 03-16] 1,002,334 sequences; 1,500,149,602 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq380849 210 2e-49 seq218873 140 3e-28 seq705227 120 3e-22 seq83784 113 4e-20 seq31841 109 5e-19 seq660234 95.1 1e-14 seq170842 84.2 2e-11 >seq380849 Length=1041 Score = 210 bits (232), Expect = 2e-49 Identities = 591/892 (66%), Gaps = 53/892 (6%) Strand=Plus/Plus Query 11354 ACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATACTCCATAAAGCTAAAA 11413 |||| | ||| |||||||| | | || ||||| || || | ||||| || ||| Sbjct 87 ACTCTTTTTTCAAAAAAATTTGATCTGCCGTCTAGAGAAATGTTTTCCATGAACGAAAAG 146 Query 11414 GGATTATATACATTGAAGA---CTT--TTTCACAACCTAACTCTGTTAATAATCTATCTG 11468 ||||| | | |||| || ||| |||| ||| | || | || | |||||| Sbjct 147 GGATTTTTTGCATTAAAATAAGCTTCGTTTCCCAAT-TGACAC----AACAGTCTATCAC 201 Query 11469 CGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGATCCACCGGAA 11528 | ||| ||||||||||| |||||| ||||||| || || | ||| || | Sbjct 202 CAACGTATTCTATATACGTTGACATTTTTTTTGAATTCATCCCAATCAAATCGCATGGCA 261 Query 11529 TAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTAT----CGA-CGT 11583 |||| | ||||| |||||||| || | ||||||| || || ||| || Sbjct 262 AAGCATTAATTAAAAAGTCCTTTTCAATTGCTATGGCATCAAGAATAATATCTCGAACGG 321 Query 11584 TATAACTTCCTTAGATGGTGGATGTAATAAATGTT---TAAACATTAAACACGCAAAATC 11640 | ||| ||||| ||| | | |||||| | |||| | || || ||||| || Sbjct 322 T-----TTCTTTAGAAGGTTTGTTAATTAAATGGTCGTTAAATAACAAGCATGCAAAGTC 376 Query 11641 ACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAA 11700 ||||| | |||||||||||||| |||| ||| || ||||| | || | || Sbjct 377 GCAATGCATCCCTTCGTCTCTACTAATTAATTCGTTGCTGGCAGTTAACGCTGGTAATAA 436 Query 11701 TCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCAC 11760 ||||| ||||| |||||||| |||| ||||| ||||||||| || || || || || Sbjct 437 TCCTCTATTTTTAATCCAAAAAATAGACGCAAAGCTACCAGAAAAAAAAATACCTTCAAC 496 Query 11761 AGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTG-CTAGA----TATCCATTTT 11815 || ||||| || || | | ||||||| | || | | || | |||||||||| Sbjct 497 CGCCGCAAAAGCCACAAGACGTTCTCCAAAA--CTCGCAGTCTCGGACTGTATCCATTTT 554 Query 11816 CTGGCCCAATCAGCTTTCTTTTTTACGCATTC----CATTGTTTCTATAGCGTTAAATAA 11871 | ||| || || || ||||||| ||| ||| |||||||| || |||||||| Sbjct 555 TTACTCCATTCCGCCTT-TTTTTTA---ATTGTGGGCATAGTTTCTATTGCATTAAATAA 610 Query 11872 ATGCATTTTTTCTATATT--ATCTCTTACATATGTATCTATTAATAAACTATACATTTCT 11929 | ||||||| | || |||| | | || | || ||||| |||||||| || Sbjct 611 AA--ATTTTTTTTGCTTTCGATCTTTAATGTACGACTCAATTAACTGACTATACAACTCC 668 Query 11930 GAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGT 11989 ||||| || |||||||| | ||||||||||| ||| | |||||| | | || Sbjct 669 GAATGTATGTTTTCCATCATCACCTGAAATCCATAAAAAACTTTTGCCTCCAAGTATTGG 728 Query 11990 ACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAA 12049 || || |||| | ||| ||| ||| ||||| || || |||||||| | ||||||| Sbjct 729 ACTTCTTTGGAAAACCGTTCAACTATATTTTCATTAACTATGCCATCACTGGCTGCAAAA 788 Query 12050 AATGCTAGTATATGTTTTATAAAGTATTTTTCG-TCTTT---AGTTAA---TTTATCCCA 12102 || || | | || |||||| |||||| ||||| | |||| || | ||| Sbjct 789 AAAGCCAAAACGTGAGATATAAA----TTTTCGTTCTTTATCATTTAAATCATTTTTCCA 844 Query 12103 ATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTG 12162 || | | ||| | || ||||| | |||||||| ||||||||||| || ||| Sbjct 845 ATGCACGATGTCTGTAGAAAAATCCAGCTCTTCAACCGTCCAAAAACTAGCTTCTGTCCT 904 Query 12163 TTTATACATTTTCCAGATATCATGATACTTAATAGGGAAAATAACGAACCTA 12214 ||||||||| ||||| || ||||||| | ||||| || |||| ||||| Sbjct 905 TTTATACATGTTCCATATGTCATGATGTTGTATAGGATAAGTAACATACCTA 956 >seq218873 Length=1880 Score = 140 bits (154), Expect = 3e-28 Identities = 360/541 (67%), Gaps = 13/541 (2%) Strand=Plus/Plus Query 37723 TCATCTTCGTTACTAAATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCC 37782 || || || |||||||| ||||| || |||| ||| ||||| || | ||| | |||| Sbjct 451 TCTTCATCATTACTAAAATGTATGATTTCTGCACACAGATTGCT-GCTCTTTATAGTCCC 509 Query 37783 AAATTGCTT-TGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCC 37841 || || || || |||||||||| ||||| |||||| ||| || || || ||||| Sbjct 510 TAAATGTTTATGGTTGGATTTTTCGTTACATTCATCTTTGAGTAGCATGTAAGGGGTTCC 569 Query 37842 TTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTCTTGCTTTAACGA-TCGCTT 37900 ||| ||||| ||| |||||| || ||||| | || || || || | | | || Sbjct 570 GGTTTCAATTTGTGCCATAATAATACTTTGCCATATATCTCGGGCCTTTACAACTTGATT 629 Query 37901 TAAtttttttCTTTGTT-----TCGTATTCTATATATAATTTGTTAAAATCATTCCCCCA 37955 |||| || || | | ||||| | ||||| || | ||| ||| || | Sbjct 630 GTATTTCTTACTGGGATCATTCTCGTAAGACGTGTATAACTTTTCAAACTCAGCACCGTA 689 Query 37956 TACATCGCATAATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTC 38015 |||| |||| ||| |||||||| |||||||||| || ||| ||| || | | Sbjct 690 GCAATCGGATAAACCTTCACATTCGCTAGGACACATTAAAGTCCAGTCTGCACCAGCTCG 749 Query 38016 TACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATA 38075 || | ||| | ||| | || || | |||||| || || || |||||| |||| || | Sbjct 750 AACTCTTTCAAAAAACAGATTCGGAAGCCATAACGCTGTGAACAAATCTCTGGTCCTTTC 809 Query 38076 TTCTTCGTTCCCTACATTCTTTCTTAAGCT-TAGAAAATCGAATATATCAGCGTGCCATG 38134 ||| || ||| ||| ||| ||||| | || || | | ||| || || ||||||| Sbjct 810 TTCATCTACCCCCGTATTTTTT-TTAAGATCTAAGAACGCAATTATGTCGGCATGCCATG 868 Query 38135 GTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAA 38194 |||| | | ||| || | ||| |||||||| |||||||||| | ||| Sbjct 869 GTTCCAGAAAAAAAACCAAAGGTCCCTTTCTTTTAT---CTCCCTGATTGACGAGTCTTG 925 Query 38195 CTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGG 38254 ||| |||| | | ||||||| || ||||||||| |||| | |||| | || ||| Sbjct 926 TCGTGGAATTAAAAACTCTTAACCGTGGCACTATACCACGAGATATACCGTCTGTATCGG 985 Query 38255 A 38255 | Sbjct 986 A 986 >seq705227 Length=470 Score = 120 bits (132), Expect = 3e-22 Identities = 162/224 (72%), Gaps = 5/224 (2%) Strand=Plus/Minus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || ||||| || || |||||||| ||||| | || ||||| | ||||| ||||| Sbjct 314 TCATCTCTGCTGATGAGTTCATTGCTGAATGTGAGACCAGGCATAATTCCTCTCTTTTTC 255 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| ||||| || ||||| ||||| || ||||| || || ||||||||||| || Sbjct 254 AACCAGAATATTGCTGCAAAACTGCCAGAGAAAAATATCCCTTCAACAGCTGCAAAGGCA 195 Query 11774 ACTACTCTTTCTCCATAT----ACCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGC 11829 || ||||||||| ||||| ||||| | | ||||||||| ||||||| || || Sbjct 194 ACAACTCTTTCTGCATATGATGCATTTGTTTC-ATTTATCCATTTAATGGCCCAGTCTGC 136 Query 11830 TTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAAAT 11873 |||||||| || ||| | || || ||||| || |||| || Sbjct 135 CTTCTTTTTCACACATGGTAAAGTCTCAATAGCATTGAATAGAT 92 >seq83784 Length=3932 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 12014 AAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAG 12073 || || ||||||||||| |||||||||| |||||| || || || | |||| ||||| Sbjct 3844 AAGTTTTCATTTACAATGCCATCACTAGCTGCAAAGAAAGCCAGGACATGTGAAATAAAA 3785 Query 12074 TATTTTTCGTCTTTAGTTAATTTATCCCAATCATCTAAATCTTTTGATAAATCTACTTCT 12133 | ||| || || | | | ||||| | | | |||||| |||||||| |||||| Sbjct 3784 TGTTTCTCCTCATCTTTCAGAGCGTCCCAGTGAATGAGATCTTTAGATAAATCAACTTCT 3725 Query 12134 TCAACGGTCCAAAAACTTGCCACTGATTGTTTATACATTTTCCAGATATCATGATACTTA 12193 ||| | ||||| || || ||| || || ||||||||||| || |||||||||| | Sbjct 3724 TCAGCTGTCCAGAAGGAGGCTTCTGCTTTCTTGTACATTTTCCAAATGTCATGATACTCA 3665 Query 12194 ATAGGGAAAATAACGAA 12210 || ||||| | ||| || Sbjct 3664 ATGGGGAAGACAACAAA 3648 >seq31841 Length=6731 Score = 109 bits (120), Expect = 5e-19 Identities = 165/229 (72%), Gaps = 8/229 (3%) Strand=Plus/Minus Query 120493 CAAGAGGAACTAGATGTTATTAAAATCAGTAAGGATGCATCGAAAATACCTAAGTGGTTA 120552 ||| | ||||| || ||||| ||||||||||| ||||| | ||| | || || ||||| Sbjct 2933 CAAAAAGAACTTGACGTTATCAAAATCAGTAAAGATGCTTTAAAAGTCCCCAACTGGTTG 2874 Query 120553 ACTATAAATAAAGCATATTA-TCCTGATTTTATTGTTAAAGATCCTAGATCTTCCCCGGT 120611 | | | || ||| || | | |||||| ||| | || ||||| || | | || || | Sbjct 2873 AATGTGAA-CAAGAATTTAATTCCTGACTTTGTGGTCAAAGACCCGAAAAAGTCACCAAT 2815 Query 120612 ATGGGAAATTACGGGATCTG-GTTT--TACATCTTCAAGTCAACATACAGCAAATGGAAT 120668 |||||||||| |||| | | |||| | |||||| | |||||||| ||||||| Sbjct 2814 CTGGGAAATTATGGGAGCAGAGTTTAGTCAATCTTC---TGCCCATACAGCTGATGGAAT 2758 Query 120669 ATCTATACGTTTTCCTAGATTTGCAAGAATAAGAAATGATAAAAATTGG 120717 ||| ||||| ||||| ||| |||| | | | ||| | ||||||| |||| Sbjct 2757 ATCAATACGATTTCCAAGAATTGCTAAAGTCAGAGACGATAAAACTTGG 2709 >seq660234 Length=515 Score = 95.1 bits (104), Expect = 1e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 11900 TATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAAT 11959 |||||||| ||||| || || |||||||| |||||||| || ||||| ||||| || ||| Sbjct 255 TATGTATCAATTAACAAGCTGTACATTTCAGAATGAATGTTCTCCATTGCTATCTGGAAT 196 Query 11960 CCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTC 12009 ||||||||||| | |||||||| | || || ||| | |||||||| Sbjct 195 CCATAGAAACACCTTGCCTCTGTAGCTTGAACTTCCTTACTGAATCTTTC 146 >seq170842 Length=2335 Score = 84.2 bits (92), Expect = 2e-11 Identities = 111/154 (72%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 36857 CCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATAT 36916 ||||| |||| | ||||| ||||| ||||||| |||| |||| | || | | | |||| Sbjct 419 CCAATTTCCAAGCATAAAAGTGCATGCTGGTCAATTTTCCGTAGTTTGGTTCAGCAATAT 360 Query 36917 ATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAA 36976 || | | ||||| || || || ||||| |||||||||||||| | ||||| | | Sbjct 359 GAATGTTGAGAGATTGGCTCTGGTCAATAAAAGCACCTCTGTCGGCAGACATTTTGATGA 300 Query 36977 TACATTTTTGAGATATCTCCCAAACCGTTTTATA 37010 | || || ||||| ||||| || || ||||| Sbjct 299 TCGTCTTCTGTGATATTTCCCATACAGTCTTATA 266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462654570788960